Alonso, Alicia

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selected publications

Persistent Increased Plasmacytoid Dendritic Cells and Inflammation in People With HIV Years After Tuberculosis. The Journal of infectious diseases. 2026 Academic Article GET IT
EXaCT-2: an augmented and customizable oncology-focused whole exome sequencing platform. NPJ precision oncology. 2026 Academic Article GET IT
Standardized metrics for assessment and reproducibility of imaging-based spatial transcriptomics datasets. Nature biotechnology. 2025 Academic Article GET IT
Times cited: 3
Longitudinal Genomic Analysis of Five Cases of Recurrent Thymomas. Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer. 2025 Academic Article GET IT
Times cited: 1
The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs. bioRxiv : the preprint server for biology. 2025 Article GET IT
A complex phylogeny of lineage plasticity in metastatic castration resistant prostate cancer. NPJ precision oncology. 2025 Academic Article GET IT
Times cited: 1
Distinct clinical outcomes and biological features of specific KRAS mutants in human pancreatic cancer. Cancer cell. 2024 Academic Article GET IT
Times cited: 51
Noninvasive Detection of Neuroendocrine Prostate Cancer through Targeted Cell-free DNA Methylation. Cancer discovery. 2024 Academic Article GET IT
Times cited: 45
Immunotherapy targeting different immune compartments in combination with radiation therapy induces regression of resistant tumors. Nature communications. 2023 Academic Article GET IT
Times cited: 44
Multicenter phase 2 study of oral azacitidine (CC-486) plus CHOP as initial treatment for PTCL. Blood. 2023 Academic Article GET IT
Times cited: 62
Detection of infiltrating fibroblasts by single-cell transcriptomics in human kidney allografts. PloS one. 2022 Academic Article GET IT
Times cited: 26
Author Correction: The SEQC2 epigenomics quality control (EpiQC) study. Genome biology. 2021 Article GET IT
The SEQC2 epigenomics quality control (EpiQC) study. Genome biology. 2021 Academic Article GET IT
Times cited: 34
Author Correction: Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study. Nature biotechnology. 2021 Article GET IT
Times cited: 5
Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states. Nature genetics. 2021 Academic Article GET IT
Times cited: 183
OCT2 pre-positioning facilitates cell fate transition and chromatin architecture changes in humoral immunity. Nature immunology. 2021 Academic Article GET IT
Times cited: 15
Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study. Nature biotechnology. 2021 Academic Article GET IT
Times cited: 105
Functional comparison of exome capture-based methods for transcriptomic profiling of formalin-fixed paraffin-embedded tumors. NPJ genomic medicine. 2021 Academic Article GET IT
Times cited: 14
Epigenomically Bistable Regions across Neuron-Specific Genes Govern Neuron Eligibility to a Coding Ensemble in the Hippocampus. Cell reports. 2020 Academic Article GET IT
Times cited: 12
Epigenetic reprogramming sensitizes immunologically silent EBV+ lymphomas to virus-directed immunotherapy. Blood. 2020 Academic Article GET IT
Times cited: 52
Circulating tumor DNA profile recognizes transformation to castration-resistant neuroendocrine prostate cancer. The Journal of clinical investigation. 2020 Academic Article GET IT
Times cited: 156
Somatic mutations and cell identity linked by Genotyping of Transcriptomes. Nature. 2019 Academic Article GET IT
Times cited: 249
Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia. Nature. 2019 Academic Article GET IT
Times cited: 221
Corrupted coordination of epigenetic modifications leads to diverging chromatin states and transcriptional heterogeneity in CLL. Nature communications. 2019 Academic Article GET IT
Times cited: 69
"Same difference": comprehensive evaluation of four DNA methylation measurement platforms. Epigenetics & chromatin. 2018 Academic Article GET IT
Times cited: 22
Histone Native Chromatin Immunoprecipitation. Methods in molecular biology (Clifton, N.J.). 2018 Academic Article GET IT
Times cited: 8
Epigenetic Identity in AML Depends on Disruption of Nonpromoter Regulatory Elements and Is Affected by Antagonistic Effects of Mutations in Epigenetic Modifiers. Cancer discovery. 2017 Academic Article GET IT
Times cited: 111
Multiplexing of ChIP-Seq Samples in an Optimized Experimental Condition Has Minimal Impact on Peak Detection. PloS one. 2015 Academic Article GET IT
Enhanced reduced representation bisulfite sequencing for assessment of DNA methylation at base pair resolution. Journal of visualized experiments : JoVE. 2015 Academic Article GET IT
Times cited: 89
The octamer is the major form of CENP-A nucleosomes at human centromeres. Nature structural & molecular biology. 2013 Academic Article GET IT
Times cited: 174
Formation of novel CENP-A domains on tandem repetitive DNA and across chromosome breakpoints on human chromosome 8q21 neocentromeres. Chromosoma. 2011 Academic Article GET IT
Times cited: 43
A paucity of heterochromatin at functional human neocentromeres. Epigenetics & chromatin. 2010 Academic Article GET IT
Times cited: 85
Co-localization of CENP-C and CENP-H to discontinuous domains of CENP-A chromatin at human neocentromeres. Genome biology. 2007 Academic Article GET IT
Times cited: 69
Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs. Genome biology. 2006 Academic Article GET IT
Times cited: 51
Genomic microarray analysis reveals distinct locations for the CENP-A binding domains in three human chromosome 13q32 neocentromeres. Human molecular genetics. 2003 Academic Article GET IT
Times cited: 91
Molecular cytogenetic analysis of eight inversion duplications of human chromosome 13q that each contain a neocentromere. American journal of human genetics. 2000 Information Resource GET IT
Times cited: 97
Effects of human chromosome 12 on interactions between Tat and TAR of human immunodeficiency virus type 1. Journal of virology. 1994 Academic Article GET IT
Times cited: 35
Human chromosome 12 is required for optimal interactions between Tat and TAR of human immunodeficiency virus type 1 in rodent cells. Journal of virology. 1992 Academic Article GET IT
Times cited: 80
Analysis of the expression of murine lambda genes transfected into immunocompetent cell lines. Molecular immunology. 1990 Academic Article GET IT
Times cited: 4
Mouse immunoglobulin gene rearrangements. The sequence of a nonexpressed lambda 3-chain gene. Journal of immunology (Baltimore, Md. : 1950). 1985 Academic Article GET IT
Times cited: 5

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Background

education and training

Ph.D., University of Toronto Faculty of Medicine (Canada) 1989
M.Sc., University of Chile (Chile) 1981
B.A., University of Chile (Chile) 1978

Contact

full name

Alicia Alonso

primary email

ala2035@med.cornell.edu

VIVO Weill Cornell Medical College

Alicia Alonso Associate Professor of Molecular Biology Research in Medicine

Publications

selected publications

Background

education and training

Contact

full name

primary email

Phone

Publications

selected publications

Background

education and training

Contact

full name

primary email