selected publications
- SIMPLE-seq to decode DNA methylation dynamics in single cells. Nature reviews. Genetics. 2024 Academic Article GET IT
- Simultaneous single-cell analysis of 5mC and 5hmC with SIMPLE-seq. Nature biotechnology. 2024 Academic Article GET IT
- SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data. Briefings in bioinformatics. 2023 Academic Article GET IT
- SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data. Nature communications. 2023 Academic Article GET IT
- Droplet-based single-cell joint profiling of histone modifications and transcriptomes. Nature structural & molecular biology. 2023 Academic Article GET IT
- Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity. Proceedings of the National Academy of Sciences of the United States of America. 2023 Academic Article GET IT
- Single-Cell Joint Profiling of Open Chromatin and Transcriptome by Paired-Seq. Methods in molecular biology (Clifton, N.J.). 2023 Academic Article GET IT
- Single-cell epigenome analysis reveals age-associated decay of heterochromatin domains in excitatory neurons in the mouse brain. Cell research. 2022 Academic Article GET IT
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DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
Nature communications.
2021
Academic Article
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Times cited: 7 -
Joint profiling of histone modifications and transcriptome in single cells from mouse brain.
Nature methods.
2021
Academic Article
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Times cited: 125 -
Transposase-assisted tagmentation of RNA/DNA hybrid duplexes.
eLife.
2020
Academic Article
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Times cited: 32 -
Differential roles of human PUS10 in miRNA processing and tRNA pseudouridylation.
Nature chemical biology.
2019
Academic Article
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Times cited: 27 -
An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome.
Nature structural & molecular biology.
2019
Academic Article
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Times cited: 176 - Single-Cell 5fC Sequencing. 2019 GET IT
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Bisulfite-Free, Nanoscale Analysis of 5-Hydroxymethylcytosine at Single Base Resolution.
Journal of the American Chemical Society.
2018
Academic Article
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Times cited: 67 -
Genome-wide mapping reveals that deoxyuridine is enriched in the human centromeric DNA.
Nature chemical biology.
2018
Academic Article
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Times cited: 29 -
Deciphering TAL effectors for 5-methylcytosine and 5-hydroxymethylcytosine recognition.
Nature communications.
2017
Academic Article
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Times cited: 26 -
Single-Cell 5-Formylcytosine Landscapes of Mammalian Early Embryos and ESCs at Single-Base Resolution.
Cell stem cell.
2017
Academic Article
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Times cited: 83 -
Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair.
Proceedings of the National Academy of Sciences of the United States of America.
2016
Academic Article
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Times cited: 45 -
Biochemical and Structural Insights into the Mechanism of DNA Recognition by Arabidopsis ETHYLENE INSENSITIVE3.
PloS one.
2015
Academic Article
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Times cited: 26 -
Oxidative demethylation of DNA and RNA mediated by non-heme iron-dependent dioxygenases.
Chemistry, an Asian journal.
2014
Review
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Times cited: 6 -
Switching demethylation activities between AlkB family RNA/DNA demethylases through exchange of active-site residues.
Angewandte Chemie (International ed. in English).
2014
Academic Article
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Times cited: 48