selected publications
- Progenitor effects and unique transcriptomic signatures linked to differentiation phenotype in clonally expanded antigen-specific CD8 T memory stem cells. Journal of immunology (Baltimore, Md. : 1950). 2025 Academic Article GET IT
- Human axillary lymph node T follicular helper (Tfh) and Precursor-Tfh cells exhibit functional flexibility following seasonal influenza vaccination. Clinical & translational immunology. 2025 Academic Article GET IT
- Refractory coeliac disease or something else?. Pathology. 2025 Letter GET IT
- Expanded CD16+CD56+Granzyme B+ NK like CD8+ T cells an off target effect of bruton's tyrosine kinase inhibitors in Waldenström macroglobulinemia. Scientific reports. 2025 Academic Article GET IT
- Temporal dynamics of viral fitness and the adaptive immune response in HCV infection. eLife. 2025 Academic Article GET IT
- Central memory T cells with key TCR repertoires and gene expression profiles dominate influenza CD8+ T cell pools across the human lifespan. Proceedings of the National Academy of Sciences of the United States of America. 2025 Academic Article GET IT
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Expanded T cell clones with lymphoma driver somatic mutations accumulate in refractory celiac disease.
Science translational medicine.
2025
Academic Article
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Times cited: 3 -
Advancing CAR T-cell Therapies with Artificial Intelligence: Opportunities and Challenges.
Blood cancer discovery.
2025
Review
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Times cited: 6 -
A triad of somatic mutagenesis converges in self-reactive B cells to cause a virus-induced autoimmune disease.
Immunity.
2025
Academic Article
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Times cited: 4 -
Copper chelation redirects neutrophil function to enhance anti-GD2 antibody therapy in neuroblastoma.
Nature communications.
2024
Academic Article
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Times cited: 4 -
Identification of clonally expanded γδ T-cell populations during CAR-T cell therapy.
Immunology and cell biology.
2024
Academic Article
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Times cited: 1 - Discovery of a monoclonal, high-affinity CD8+ T-cell clone following natural hepatitis C virus infection. Immunology and cell biology. 2024 Academic Article GET IT
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The CD8+ T cell tolerance checkpoint triggers a distinct differentiation state defined by protein translation defects.
Immunity.
2024
Academic Article
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Times cited: 9 - A novel network-based method identifies a cuproplasia-related pan-cancer gene signature to predict patient outcome. Human genetics. 2024 Academic Article GET IT
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B-cell characteristics define HCV reinfection outcome.
Journal of hepatology.
2024
Academic Article
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Times cited: 8 - In-depth profiling of tumor tissue derived from malignant pleural mesothelioma patients identifies potential biomarkers predicting response to immune-checkpoint inhibitor therapy. Genes & diseases. 2023 Academic Article GET IT
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CAR+ and CAR- T cells share a differentiation trajectory into an NK-like subset after CD19 CAR T cell infusion in patients with B cell malignancies.
Nature communications.
2023
Academic Article
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Times cited: 25 -
Chimeric Antigen Receptor T Cell Therapy Targeting Epithelial Cell Adhesion Molecule in Gastric Cancer: Mechanisms of Tumor Resistance.
Cancers.
2023
Academic Article
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Times cited: 5 -
Global and cell type-specific immunological hallmarks of severe dengue progression identified via a systems immunology approach.
Nature immunology.
2023
Academic Article
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Times cited: 24 -
Newborn and child-like molecular signatures in older adults stem from TCR shifts across human lifespan.
Nature immunology.
2023
Academic Article
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Times cited: 20 -
A conversation on allergy: recognizing the past and looking to the future.
Immunology and cell biology.
2023
Academic Article
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Times cited: 3 -
Identification of human progenitors of exhausted CD8+ T cells associated with elevated IFN-γ response in early phase of viral infection.
Nature communications.
2022
Academic Article
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Times cited: 21 -
High activation levels maintained in receptor-binding domain-specific memory B cells in people with severe coronavirus disease 2019.
Immunology and cell biology.
2022
Academic Article
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Times cited: 5 -
VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2.
Nature methods.
2022
Letter
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Times cited: 115 -
Haematopoietic Stem Cell Transplantation Results in Extensive Remodelling of the Clonal T Cell Repertoire in Multiple Sclerosis.
Frontiers in immunology.
2022
Academic Article
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Times cited: 18 -
CD8+ T cell landscape in Indigenous and non-Indigenous people restricted by influenza mortality-associated HLA-A*24:02 allomorph.
Nature communications.
2021
Academic Article
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Times cited: 33 -
Antigen-driven EGR2 expression is required for exhausted CD8+ T cell stability and maintenance.
Nature communications.
2021
Academic Article
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Times cited: 35 -
One year into the pandemic: Short-term evolution of SARS-CoV-2 and emergence of new lineages.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
2021
Review
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Times cited: 50 -
Human CD8 T-stem cell memory subsets phenotypic and functional characterization are defined by expression of CD122 or CXCR3.
European journal of immunology.
2021
Academic Article
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Times cited: 9 -
Natural killer cell receptors regulate responses of HLA-E-restricted T cells.
Science immunology.
2021
Academic Article
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Times cited: 19 -
Prophylactic antigen-specific T-cells targeting seven viral and fungal pathogens after allogeneic haemopoietic stem cell transplant.
Clinical & translational immunology.
2021
Academic Article
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Times cited: 36 -
Hepatitis C treatment strategies in prisons: A cost-effectiveness analysis.
PloS one.
2021
Academic Article
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Times cited: 14 -
Atypical B cells are part of an alternative lineage of B cells that participates in responses to vaccination and infection in humans.
Cell reports.
2021
Academic Article
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Times cited: 144 - Omics in immunology. Immunology and cell biology. 2021 Editorial Article GET IT
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Recent advances in single-cell multimodal analysis to study immune cells.
Immunology and cell biology.
2021
Review
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Times cited: 9 -
Quantitative analysis of the splice variants expressed by the major hepatitis B virus genotypes.
Microbial genomics.
2021
Academic Article
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Times cited: 28 -
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis.
Nature communications.
2020
Academic Article
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Times cited: 204 -
Conserved epitopes with high HLA-I population coverage are targets of CD8+ T cells associated with high IFN-γ responses against all dengue virus serotypes.
Scientific reports.
2020
Academic Article
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Times cited: 8 -
Cytotoxic T cells swarm by homotypic chemokine signalling.
eLife.
2020
Academic Article
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Times cited: 69 -
SARS-CoV-2 and COVID-19: A genetic, epidemiological, and evolutionary perspective.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
2020
Review
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Times cited: 108 -
Exploring and analysing single cell multi-omics data with VDJView.
BMC medical genomics.
2020
Academic Article
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Times cited: 18 -
Lymphoma Driver Mutations in the Pathogenic Evolution of an Iconic Human Autoantibody.
Cell.
2020
Academic Article
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Times cited: 104 -
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium.
Nucleic acids research.
2020
Academic Article
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Times cited: 270 -
B cell immunodominance in primary hepatitis C virus infection.
Journal of hepatology.
2019
Academic Article
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Times cited: 27 -
High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes.
Nature communications.
2019
Academic Article
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Times cited: 207 -
Genomic characterization of hepatitis C virus transmitted founder variants with deep sequencing.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
2019
Academic Article
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Times cited: 17 -
Human CD8+ T cell cross-reactivity across influenza A, B and C viruses.
Nature immunology.
2019
Academic Article
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Times cited: 192 -
Higher abundance of enterovirus A species in the gut of children with islet autoimmunity.
Scientific reports.
2019
Academic Article
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Times cited: 44 -
Genomic variability of within-host hepatitis C variants in acute infection.
Journal of viral hepatitis.
2019
Academic Article
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Times cited: 6 -
Single-Cell Transcriptome Analysis of T Cells.
Methods in molecular biology (Clifton, N.J.).
2019
Academic Article
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Times cited: 2 -
Dynamic interactions between RNA viruses and human hosts unravelled by a decade of next generation sequencing.
Biochimica et biophysica acta. General subjects.
2018
Review
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Times cited: 3 -
Understanding the Determinants of BnAb Induction in Acute HCV Infection.
Viruses.
2018
Academic Article
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Times cited: 16 -
Memory B cells are reactivated in subcapsular proliferative foci of lymph nodes.
Nature communications.
2018
Academic Article
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Times cited: 88 -
B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle.
Bioinformatics (Oxford, England).
2018
Academic Article
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Times cited: 75 -
Amplification and next generation sequencing of near full-length human enteroviruses for identification and characterisation from clinical samples.
Scientific reports.
2018
Academic Article
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Times cited: 27 -
Clonally diverse CD38+HLA-DR+CD8+ T cells persist during fatal H7N9 disease.
Nature communications.
2018
Academic Article
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Times cited: 101 -
Longitudinal injecting risk behaviours among people with a history of injecting drug use in an Australian prison setting: The HITS-p study.
The International journal on drug policy.
2018
Academic Article
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Times cited: 58 -
Impact of sequencing depth and read length on single cell RNA sequencing data of T cells.
Scientific reports.
2017
Academic Article
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Times cited: 55 -
A Liver Capsular Network of Monocyte-Derived Macrophages Restricts Hepatic Dissemination of Intraperitoneal Bacteria by Neutrophil Recruitment.
Immunity.
2017
Academic Article
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Times cited: 203 -
Influence of Transmitted Virus on the Host's Immune Response: A Case Study.
2017
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Times cited: 1 -
Ongoing incident hepatitis C virus infection among people with a history of injecting drug use in an Australian prison setting, 2005-2014: The HITS-p study.
Journal of viral hepatitis.
2017
Academic Article
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Times cited: 70 -
Dynamic evolution of hepatitis C virus resistance-associated substitutions in the absence of antiviral treatment.
Scientific reports.
2017
Academic Article
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Times cited: 15 -
Limited naturally occurring escape in broadly neutralizing antibody epitopes in hepatitis C glycoprotein E2 and constrained sequence usage in acute infection.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
2017
Academic Article
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Times cited: 10 -
Understanding the complex evolution of rapidly mutating viruses with deep sequencing: Beyond the analysis of viral diversity.
Virus research.
2016
Review
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Times cited: 18 -
Accumulation of Deleterious Passenger Mutations Is Associated with the Progression of Hepatocellular Carcinoma.
PloS one.
2016
Academic Article
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Times cited: 14 -
Historical Trends in the Hepatitis C Virus Epidemics in North America and Australia.
The Journal of infectious diseases.
2016
Academic Article
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Times cited: 15 -
Single-Molecule Sequencing Reveals Complex Genome Variation of Hepatitis B Virus during 15 Years of Chronic Infection following Liver Transplantation.
Journal of virology.
2016
Academic Article
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Times cited: 39 -
Incident Hepatitis C Virus Genotype Distribution and Multiple Infection in Australian Prisons.
Journal of clinical microbiology.
2016
Academic Article
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Times cited: 16 -
HCV RNA traffic and association with NS5A in living cells.
Virology.
2016
Academic Article
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Times cited: 9 -
A method for near full-length amplification and sequencing for six hepatitis C virus genotypes.
BMC genomics.
2016
Academic Article
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Times cited: 56 -
Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells.
Immunology and cell biology.
2016
Academic Article
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Times cited: 100 -
Natural killer cells in highly exposed hepatitis C-seronegative injecting drug users.
Journal of viral hepatitis.
2016
Academic Article
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Times cited: 4