selected publications
- Microtubule association induces a Mg-free apo-like ADP pre-release conformation in kinesin-1 that is unaffected by its autoinhibitory tail. Nature communications. 2025 Academic Article GET IT
- A small molecule enhances arrestin-3 binding to the β2-adrenergic receptor. Communications chemistry. 2025 Academic Article GET IT
- Insights into Ligand-Specific Activation Dynamics of Dopamine D2 Receptor Explored by MD Simulations. Journal of chemical information and modeling. 2025 Academic Article GET IT
- A small molecule enhances arrestin-3 binding to the β2-adrenergic receptor. 2024 GET IT
- Inhibition of the SARS-CoV-2 Non-structural Protein 5 (NSP5) Protease by Nitrosocarbonyl-Bases Small Molecules. ACS omega. 2024 Academic Article GET IT
- Exploring Mutation-Driven Changes in the ATP-ADP Conformational Cycle of Human Hsp70 by All-Atom MD Adaptive Sampling. The journal of physical chemistry. B. 2024 Academic Article GET IT
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Inhibition of the RNA-Dependent RNA-Polymerase from SARS-CoV-2 by 6-Chloropurine Isoxazoline-Carbocyclic Monophosphate Nucleotides.
ACS omega.
2023
Academic Article
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Times cited: 2 -
Editorial: Computational drug discovery for targeting of protein-protein interfaces-Volume II.
Frontiers in chemistry.
2023
Editorial Article
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Times cited: 2 -
Gluten Exorphins Promote Cell Proliferation through the Activation of Mitogenic and Pro-Survival Pathways.
International journal of molecular sciences.
2023
Academic Article
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Times cited: 3 -
Cholesterol occupies the lipid translocation pathway to block phospholipid scrambling by a G protein-coupled receptor.
Structure (London, England : 1993).
2022
Academic Article
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Times cited: 6 -
The Answer Lies in the Energy: How Simple Atomistic Molecular Dynamics Simulations May Hold the Key to Epitope Prediction on the Fully Glycosylated SARS-CoV-2 Spike Protein.
The journal of physical chemistry letters.
2020
Academic Article
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Times cited: 37 -
Simple Model of Protein Energetics To Identify Ab Initio Folding Transitions from All-Atom MD Simulations of Proteins.
Journal of chemical theory and computation.
2020
Academic Article
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Times cited: 12 -
Tryptophan scanning mutagenesis as a way to mimic the compound-bound state and probe the selectivity of allosteric inhibitors in cells.
Chemical science.
2020
Academic Article
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Times cited: 18 -
A Machine Learning Approach for the Discovery of Ligand-Specific Functional Mechanisms of GPCRs.
Molecules (Basel, Switzerland).
2019
Academic Article
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Times cited: 56 -
A Local Allosteric Network in Heat Shock Protein 70 (Hsp70) Links Inhibitor Binding to Enzyme Activity and Distal Protein-Protein Interactions.
ACS chemical biology.
2018
Academic Article
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Times cited: 21 -
How the Ligand-Induced Reorganization of Protein Internal Energies Is Coupled to Conformational Events.
Journal of chemical theory and computation.
2018
Academic Article
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Times cited: 12 -
Allosteric Modulators of HSP90 and HSP70: Dynamics Meets Function through Structure-Based Drug Design.
Journal of medicinal chemistry.
2018
Review
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Times cited: 73 -
Prediction and Targeting of Interaction Interfaces in G-protein Coupled Receptor Oligomers.
Current topics in medicinal chemistry.
2018
Information Resource
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Times cited: 11 -
Mechanisms of Lipid Scrambling by the G Protein-Coupled Receptor Opsin.
Structure (London, England : 1993).
2017
Academic Article
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Times cited: 49 -
Role of Terahertz (THz) Fluctuations in the Allosteric Properties of the PDZ Domains.
The journal of physical chemistry. B.
2017
Academic Article
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Times cited: 7 -
Computational studies of G protein-coupled receptor complexes: Structure and dynamics.
Methods in cell biology.
2017
Article
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Times cited: 5 -
Crystal Structure of the DFNKF Segment of Human Calcitonin Unveils Aromatic Interactions between Phenylalanines.
Chemistry (Weinheim an der Bergstrasse, Germany).
2016
Academic Article
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Times cited: 29 -
Allosteric Regulation Points Control the Conformational Dynamics of the Molecular Chaperone Hsp90.
Journal of molecular biology.
2016
Academic Article
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Times cited: 61 -
Understanding the Differential Selectivity of Arrestins toward the Phosphorylation State of the Receptor.
ACS chemical neuroscience.
2016
Academic Article
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Times cited: 13 -
An atomistic view of Hsp70 allosteric crosstalk: from the nucleotide to the substrate binding domain and back.
Scientific reports.
2016
Academic Article
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Times cited: 37 -
Structural Stability and Flexibility Direct the Selection of Activating Mutations in Epidermal Growth Factor Receptor Kinase.
Journal of chemical information and modeling.
2015
Academic Article
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Times cited: 26 -
Mechanisms of Differential Allosteric Modulation in Homologous Proteins: Insights from the Analysis of Internal Dynamics and Energetics of PDZ Domains.
Journal of chemical theory and computation.
2014
Academic Article
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Times cited: 37 -
Dynamic structure of NGF and proNGF complexed with p75NTR: pro-peptide effect.
Journal of chemical information and modeling.
2014
Academic Article
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Times cited: 4 -
Protein and lipid interactions driving molecular mechanisms of in meso crystallization.
Journal of the American Chemical Society.
2014
Academic Article
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Times cited: 17 -
Corresponding functional dynamics across the Hsp90 Chaperone family: insights from a multiscale analysis of MD simulations.
PLoS computational biology.
2012
Academic Article
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Times cited: 103 -
Selecting sequences that fold into a defined 3D structure: A new approach for protein design based on molecular dynamics and energetics.
Biophysical chemistry.
2009
Academic Article
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Times cited: 16 -
Modeling signal propagation mechanisms and ligand-based conformational dynamics of the Hsp90 molecular chaperone full-length dimer.
PLoS computational biology.
2009
Academic Article
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Times cited: 130