selected publications
- Type I IFN drives unconventional IL-1β secretion in lupus monocytes. Immunity. 2024 Academic Article GET IT
- Optimization of ultracentrifugation-based method to enhance the purity and proteomic profiling depth of plasma-derived extracellular vesicles and particles. Journal of extracellular biology. 2024 Academic Article GET IT
- Ragas: integration and enhanced visualization for single cell subcluster analysis. Bioinformatics (Oxford, England). 2024 Academic Article GET IT
- Khdc3 Regulates Metabolism Across Generations in a DNA-Independent Manner. 2024 GET IT
- Transcriptomic analyses of patient peripheral blood with hemoglobin depletion reveal glioblastoma biomarkers. NPJ genomic medicine. 2023 Academic Article GET IT
- Juvenile dermatomyositis disease activity is associated with the expansion of blood B and T-cell memory subsets lacking follicular markers. Arthritis & rheumatology (Hoboken, N.J.). 2023 Academic Article GET IT
- Dietary long-chain omega 3 fatty acids modify sphingolipid metabolism to facilitate airway hyperreactivity. Scientific reports. 2022 Academic Article GET IT
- Dysregulated DNA methylation in the pathogenesis of Fabry disease. Molecular genetics and metabolism reports. 2022 Academic Article GET IT
- A Human Barrett's Esophagus Organoid System Reveals Epithelial-Mesenchymal Plasticity Induced by Acid and Bile Salts. American journal of physiology. Gastrointestinal and liver physiology. 2022 Academic Article GET IT
- Human Rhinovirus Infection of the Respiratory Tract Affects Sphingolipid Synthesis. American journal of respiratory cell and molecular biology. 2021 Academic Article GET IT
- Erythroid mitochondrial retention triggers myeloid-dependent type I interferon in human SLE. Cell. 2021 Academic Article GET IT
- Screening for SARS-CoV-2 via PCR and serological testing in asymptomatic healthcare workers. Proceedings (Baylor University. Medical Center). 2021 Academic Article GET IT
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In Esophageal Squamous Cells From Eosinophilic Esophagitis Patients, Th2 Cytokines Increase Eotaxin-3 Secretion Through Effects on Intracellular Calcium and a Non-Gastric Proton Pump.
Gastroenterology.
2021
Academic Article
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Times cited: 1 -
Identifying intracellular signaling modules and exploring pathways associated with breast cancer recurrence.
Scientific reports.
2021
Academic Article
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Times cited: 7 -
Cerina: systematic circRNA functional annotation based on integrative analysis of ceRNA interactions.
Scientific reports.
2020
Academic Article
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Times cited: 17 -
Lower esophageal sphincter muscle of patients with achalasia exhibits profound mast cell degranulation.
Neurogastroenterology and motility.
2020
Academic Article
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Times cited: 11 -
A Human Lung Challenge Model to Evaluate the Safety and Immunogenicity of PPD and Live Bacillus Calmette-Guérin.
American journal of respiratory and critical care medicine.
2020
Academic Article
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Times cited: 13 -
BICORN: An R package for integrative inference of de novo cis-regulatory modules.
Scientific reports.
2020
Academic Article
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Times cited: 4 -
Brief communication: Long-term absence of Langerhans cells alters the gene expression profile of keratinocytes and dendritic epidermal T cells.
PloS one.
2020
Academic Article
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Times cited: 8 -
Profiling Gene Programs in the Blood During Liver Regeneration in Living Liver Donors.
Liver transplantation : official publication of the American Association for the Study of Liver Diseases and the International Liver Transplantation Society.
2019
Academic Article
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Times cited: 5 -
Breaking the paradigm: Dr Insight empowers signature-free, enhanced drug repurposing.
Bioinformatics (Oxford, England).
2019
Academic Article
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Times cited: 31 -
Differential expression and release of exosomal miRNAs by human islets under inflammatory and hypoxic stress.
Diabetologia.
2019
Academic Article
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Times cited: 26 -
Functional rare and low frequency variants in BLK and BANK1 contribute to human lupus.
Nature communications.
2019
Academic Article
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Times cited: 89 -
Cancer stem cell-associated miRNAs serve as prognostic biomarkers in colorectal cancer.
JCI insight.
2019
Academic Article
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Times cited: 26 -
A combination of curcumin and oligomeric proanthocyanidins offer superior anti-tumorigenic properties in colorectal cancer.
Scientific reports.
2018
Academic Article
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Times cited: 55 -
Mechanistic insights into anticancer properties of oligomeric proanthocyanidins from grape seeds in colorectal cancer.
Carcinogenesis.
2018
Academic Article
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Times cited: 44 -
CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data.
Bioinformatics (Oxford, England).
2018
Academic Article
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Times cited: 10 -
Oligomeric proanthocyanidins (OPCs) target cancer stem-like cells and suppress tumor organoid formation in colorectal cancer.
Scientific reports.
2018
Academic Article
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Times cited: 64 -
A multidimensional blood stimulation assay reveals immune alterations underlying systemic juvenile idiopathic arthritis.
The Journal of experimental medicine.
2017
Academic Article
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Times cited: 42 -
Phantom: investigating heterogeneous gene sets in time-course data.
Bioinformatics (Oxford, England).
2017
Academic Article
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Times cited: 1 -
DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency.
Bioinformatics (Oxford, England).
2016
Academic Article
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Times cited: 4 -
Mevalonate Pathway Antagonist Suppresses Formation of Serous Tubal Intraepithelial Carcinoma and Ovarian Carcinoma in Mouse Models.
Clinical cancer research : an official journal of the American Association for Cancer Research.
2015
Academic Article
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Times cited: 48 -
BADGE: a novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data.
BMC bioinformatics.
2014
Academic Article
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Times cited: 11 -
mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks.
BMC systems biology.
2013
Academic Article
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Times cited: 3 -
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
Bioinformatics (Oxford, England).
2012
Academic Article
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Times cited: 8 -
Integrative network analysis to identify aberrant pathway networks in ovarian cancer.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.
2012
Academic Article
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Times cited: 10 -
GIST: a Gibbs sampler to identify intracellular signal transduction pathways.
Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference.
2011
Academic Article
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Times cited: 1 -
Distinct DNA methylation profiles in ovarian serous neoplasms and their implications in ovarian carcinogenesis.
American journal of obstetrics and gynecology.
2010
Academic Article
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Times cited: 50