selected publications
- Spatial isoform sequencing at sub-micrometer single-cell resolution reveals novel patterns of spatial isoform variability in brain cell types. 2025 GET IT
- A single-cell, long-read, isoform-resolved case-control study of FTD reveals cell-type-specific and broad splicing dysregulation in human brain. Cell reports. 2025 Academic Article GET IT
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A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types.
Nature communications.
2025
Academic Article
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Times cited: 1 - NRCAM variant defined by microexon skipping is a targetable cell surface proteoform in high-grade gliomas. Cell reports. 2025 Academic Article GET IT
- NRCAM variant defined by microexon skipping is a targetable cell surface proteoform in high-grade gliomas. 2025 GET IT
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Combined single-cell profiling of chromatin-transcriptome and splicing across brain cell types, regions and disease state.
Nature biotechnology.
2025
Academic Article
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Times cited: 1 - A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types. 2025 GET IT
- Nascent and Mature RNA Profiling by Subcellular Fractionation in Human Cells. Methods in molecular biology (Clifton, N.J.). 2025 Academic Article GET IT
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Understanding isoform expression by pairing long-read sequencing with single-cell and spatial transcriptomics.
Genome research.
2024
Review
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Times cited: 9 - ScISOr-ATAC reveals convergent and divergent splicing and chromatin specificities between matched cell types across cortical regions, evolution, and in Alzheimer's Disease. 2024 GET IT
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From words to complete phrases: insight into single-cell isoforms using short and long reads.
Transcription.
2023
Review
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Times cited: 10 -
Accurate isoform discovery with IsoQuant using long reads.
Nature biotechnology.
2023
Academic Article
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Times cited: 86 -
The variables on RNA molecules: concert or cacophony? Answers in long-read sequencing.
Nature methods.
2023
Academic Article
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Times cited: 20 -
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue.
Nature biotechnology.
2022
Academic Article
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Times cited: 72 -
HOTAIR lncRNA promotes epithelial-mesenchymal transition by redistributing LSD1 at regulatory chromatin regions.
EMBO reports.
2021
Academic Article
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Times cited: 39 -
History, Discovery, and Classification of lncRNAs.
Advances in experimental medicine and biology.
2017
Review
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Times cited: 775