selected publications
- A single-cell, long-read, isoform-resolved case-control study of FTD reveals cell-type-specific and broad splicing dysregulation in human brain. Cell reports. 2025 Academic Article GET IT
- A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types. Nature communications. 2025 Academic Article GET IT
- NRCAM variant defined by microexon skipping is a targetable cell surface proteoform in high-grade gliomas. Cell reports. 2025 Academic Article GET IT
- Combined single-cell profiling of chromatin-transcriptome and splicing across brain cell types, regions and disease state. Nature biotechnology. 2025 Academic Article GET IT
- Spatial isoform sequencing at sub-micrometer single-cell resolution reveals novel patterns of spatial isoform variability in brain cell types. 2025 GET IT
- A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types. 2025 GET IT
- Neuronal cell adhesion molecule (NRCAM) variant defined by microexon skipping is an essential, antigenically distinct, and targetable proteoform in high-grade glioma. 2025 GET IT
- Nascent and Mature RNA Profiling by Subcellular Fractionation in Human Cells. Methods in molecular biology (Clifton, N.J.). 2025 Academic Article GET IT
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Understanding isoform expression by pairing long-read sequencing with single-cell and spatial transcriptomics.
Genome research.
2024
Review
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Times cited: 8 - ScISOr-ATAC reveals convergent and divergent splicing and chromatin specificities between matched cell types across cortical regions, evolution, and in Alzheimer's Disease. 2024 GET IT
- From words to complete phrases: insight into single-cell isoforms using short and long reads. Transcription. 2023 Review GET IT
- Accurate isoform discovery with IsoQuant using long reads. Nature biotechnology. 2023 Academic Article GET IT
- The variables on RNA molecules: concert or cacophony? Answers in long-read sequencing. Nature methods. 2023 Academic Article GET IT
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Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue.
Nature biotechnology.
2022
Academic Article
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Times cited: 69 -
HOTAIR lncRNA promotes epithelial-mesenchymal transition by redistributing LSD1 at regulatory chromatin regions.
EMBO reports.
2021
Academic Article
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Times cited: 38 -
History, Discovery, and Classification of lncRNAs.
Advances in experimental medicine and biology.
2017
Review
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Times cited: 775