publication venue for
- Correction to: A prototypical non-malignant epithelial model to study genome dynamics and concurrently monitor micro-RNAs and proteins in situ during oncogene-induced senescence. 2021
- Full-length isoform concatenation sequencing to resolve cancer transcriptome complexity.. 25. 2024
- Comprehensive microRNA analysis across genome-edited colorectal cancer organoid models reveals miR-24 as a candidate regulator of cell survival.. 23. 2022
- Novel subpopulations in date palm (Phoenix dactylifera) identified by population-wide organellar genome sequencing.. 20. 2019
- Virulence factor landscape of a Staphylococcus aureus sequence type 45 strain, MCRF184.. 20. 2019
- Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.. 19. 2018
- Identification of two different chemosensory pathways in representatives of the genus Halomonas.. 19. 2018
- PopPAnTe: population and pedigree association testing for quantitative data.. 18. 2017
- Melanoma genome evolution across species.. 18. 2017
- CrossLink: a novel method for cross-condition classification of cancer subtypes.. 17 Suppl 7. 2016
- Forward genetic screen of human transposase genomic rearrangements.. 17. 2016
- Integrative phenotyping framework (iPF): integrative clustering of multiple omics data identifies novel lung disease subphenotypes.. 16. 2015
- Copy number variations in the genome of the Qatari population.. 16. 2015
- A computational method for clinically relevant cancer stratification and driver mutation module discovery using personal genomics profiles.. 16 Suppl 7. 2015
- Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution.. 16. 2015
- Simple regression for correcting ΔCt bias in RT-qPCR low-density array data normalization.. 16. 2015
- Comparative exomics of Phalaris cultivars under salt stress.. 15 Suppl 6. 2014
- Glucocorticoid receptor coordinates transcription factor-dominated regulatory network in macrophages.. 15. 2014
- The sex-specific transcriptome of the hermaphrodite sparid sharpsnout seabream (Diplodus puntazzo).. 15. 2014
- A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms.. 15. 2014
- Automated workflow-based exploitation of pathway databases provides new insights into genetic associations of metabolite profiles.. 14. 2013
- A systems biology approach using metabolomic data reveals genes and pathways interacting to modulate divergent growth in cattle.. 14. 2013
- Automatic B cell lymphoma detection using flow cytometry data.. 14 Suppl 7. 2013
- A simple and reproducible breast cancer prognostic test.. 14. 2013
- The stable traits of melanoma genetics: an alternate approach to target discovery.. 13. 2012
- Genome-wide analysis of Pax8 binding provides new insights into thyroid functions.. 13. 2012
- RNA-Seq quantification of the human small airway epithelium transcriptome.. 13. 2012
- Altered gene expression profiles in the hippocampus and prefrontal cortex of type 2 diabetic rats.. 13. 2012
- The epigenetic regulator Histone Deacetylase 1 promotes transcription of a core neurogenic programme in zebrafish embryos.. 12. 2011
- Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays.. 11. 2010
- Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.. 11. 2010
- Quality control in microarray assessment of gene expression in human airway epithelium.. 10. 2009
- Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity.. 10. 2009
- Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference.. 9. 2008
- Literature Lab: a method of automated literature interrogation to infer biology from microarray analysis.. 8. 2007
- Comparison of the latest commercial short and long oligonucleotide microarray technologies.. 7. 2006
- Ribosomal profiling of human endogenous retroviruses in healthy tissues. 2024