publication venue for
- Benchmarking multi-ancestry prostate cancer polygenic risk scores in a real-world cohort.. 20. 2024
- STENCIL: A web templating engine for visualizing and sharing life science datasets.. 18. 2022
- Multivariable association discovery in population-scale meta-omics studies.. 17. 2021
- A statistical model for describing and simulating microbial community profiles.. 17. 2021
- Efficient representations of tumor diversity with paired DNA-RNA aberrations.. 17. 2021
- A machine learning and network framework to discover new indications for small molecules.. 16. 2020
- A crowdsourced set of curated structural variants for the human genome.. 16. 2020
- A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type.. 16. 2020
- Prediction of off-target specificity and cell-specific fitness of CRISPR-Cas System using attention boosted deep learning and network-based gene feature.. 15. 2019
- Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression.. 15. 2019
- A Markov chain for numerical chromosomal instability in clonally expanding populations.. 14. 2018
- clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.. 14. 2018
- Information-theoretic analysis of realistic odor plumes: What cues are useful for determining location?. 14. 2018
- The E2.65A mutation disrupts dynamic binding poses of SB269652 at the dopamine D2 and D3 receptors.. 14. 2018
- A Bayesian method for detecting pairwise associations in compositional data.. 13. 2017
- Brain network eigenmodes provide a robust and compact representation of the structural connectome in health and disease.. 13. 2017
- Hard real-time closed-loop electrophysiology with the Real-Time eXperiment Interface (RTXI).. 13. 2017
- An independent component analysis confounding factor correction framework for identifying broad impact expression quantitative trait loci.. 13. 2017
- A Computational Approach for Identifying Synergistic Drug Combinations.. 13. 2017
- Markov Networks of Collateral Resistance: National Antimicrobial Resistance Monitoring System Surveillance Results from Escherichia coli Isolates, 2004-2012.. 12. 2016
- Exome Sequencing and Prediction of Long-Term Kidney Allograft Function.. 12. 2016
- Theory and Experimental Validation of a Spatio-temporal Model of Chemotherapy Transport to Enhance Tumor Cell Kill.. 12. 2016
- A Geometrically-Constrained Mathematical Model of Mammary Gland Ductal Elongation Reveals Novel Cellular Dynamics within the Terminal End Bud.. 12. 2016
- Relating Cortical Atrophy in Temporal Lobe Epilepsy with Graph Diffusion-Based Network Models.. 11. 2015
- miRTex: A Text Mining System for miRNA-Gene Relation Extraction.. 11. 2015
- Cell-specific cardiac electrophysiology models.. 11. 2015
- NbIT--a new information theory-based analysis of allosteric mechanisms reveals residues that underlie function in the leucine transporter LeuT.. 10. 2014
- Timing over tuning: overcoming the shortcomings of a line attractor during a working memory task.. 10. 2014
- Perturbation biology: inferring signaling networks in cellular systems.. 9. 2013
- Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota.. 9. 2013
- PUMA: a unified framework for penalized multiple regression analysis of GWAS data.. 9. 2013
- An integrated computational/experimental model of lymphoma growth.. 9. 2013
- Connecting the kinetics and energy landscape of tRNA translocation on the ribosome.. 9. 2013
- Interpretation of genomic variants using a unified biological network approach.. 9. 2013
- SnIPRE: selection inference using a Poisson random effects model.. 8. 2012
- Ligand-dependent conformations and dynamics of the serotonin 5-HT(2A) receptor determine its activation and membrane-driven oligomerization properties.. 8. 2012
- Effects of electrical and structural remodeling on atrial fibrillation maintenance: a simulation study.. 8. 2012
- A mathematical methodology for determining the temporal order of pathway alterations arising during gliomagenesis.. 8. 2012
- NHE inhibition does not improve Na(+) or Ca(2+) overload during reperfusion: using modeling to illuminate the mechanisms underlying a therapeutic failure.. 7. 2011
- Gene expression network reconstruction by convex feature selection when incorporating genetic perturbations.. 6. 2010
- Computational analysis of phosphopeptide binding to the polo-box domain of the mitotic kinase PLK1 using molecular dynamics simulation.. 6. 2010
- A differentiation-based phylogeny of cancer subtypes.. 6. 2010
- Genome-wide modeling of transcription preinitiation complex disassembly mechanisms using ChIP-chip data.. 6. 2010
- Optimal experimental design for parameter estimation of a cell signaling model.. 5. 2009
- Eradication of chronic myeloid leukemia stem cells: a novel mathematical model predicts no therapeutic benefit of adding G-CSF to imatinib.. 5. 2009
- Pairwise maximum entropy models for studying large biological systems: when they can work and when they can't.. 5. 2009
- Functional brain networks develop from a "local to distributed" organization.. 5. 2009
- Computational analysis of mouse piRNA sequence and biogenesis.. 3. 2007
- Structure-templated predictions of novel protein interactions from sequence information.. 3. 2007
- Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays.. 2. 2006
- Revealing posttranscriptional regulatory elements through network-level conservation.. 1. 2005
- Chapter 17: bioimage informatics for systems pharmacology. 2013
- Genomics and privacy: implications of the new reality of closed data for the field. 2011