TACO produces robust multisample transcriptome assemblies from RNA-seq. Academic Article uri icon

Overview

abstract

  • Accurate transcript structure and abundance inference from RNA sequencing (RNA-seq) data is foundational for molecular discovery. Here we present TACO, a computational method to reconstruct a consensus transcriptome from multiple RNA-seq data sets. TACO employs novel change-point detection to demarcate transcript start and end sites, leading to improved reconstruction accuracy compared with other tools in its class. The tool is available at http://tacorna.github.io and can be readily incorporated into RNA-seq analysis workflows.

publication date

  • November 21, 2016

Research

keywords

  • Computational Biology
  • Gene Expression Profiling
  • High-Throughput Nucleotide Sequencing
  • Software
  • Transcriptome

Identity

PubMed Central ID

  • PMC5199618

Scopus Document Identifier

  • 84997051809

Digital Object Identifier (DOI)

  • 10.1038/nmeth.4078

PubMed ID

  • 27869815

Additional Document Info

volume

  • 14

issue

  • 1