selected publications
- Modeling tissue-specific breakpoint proximity of structural variations from whole-genomes to identify cancer drivers. Nature communications. 2022 Academic Article GET IT
- Enhancing Recovery After Major Bladder Cancer Surgery: Comprehensive Review and Assessment of Application of the Enhanced Recovery After Surgery Guidelines. European urology focus. 2022 Review GET IT
- Chromatin profiles classify castration-resistant prostate cancers suggesting therapeutic targets. Science (New York, N.Y.). 2022 Academic Article GET IT
- Systems biology analysis of human genomes points to key pathways conferring spina bifida risk. Proceedings of the National Academy of Sciences of the United States of America. 2021 Academic Article GET IT
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CNCDatabase: a database of non-coding cancer drivers.
Nucleic acids research.
2021
Academic Article
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Times cited: 9 -
DeepMILO: a deep learning approach to predict the impact of non-coding sequence variants on 3D chromatin structure.
Genome biology.
2020
Academic Article
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Times cited: 35 -
Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences.
Cell.
2020
Academic Article
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Times cited: 88 -
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
Nature.
2020
Academic Article
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Times cited: 365 -
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis.
Communications biology.
2020
Academic Article
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Times cited: 146 -
Combined burden and functional impact tests for cancer driver discovery using DriverPower.
Nature communications.
2020
Academic Article
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Times cited: 25 -
Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing.
Nature genetics.
2020
Academic Article
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Times cited: 397 -
Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer.
Nature genetics.
2020
Academic Article
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Times cited: 154 -
Genomic footprints of activated telomere maintenance mechanisms in cancer.
Nature communications.
2020
Academic Article
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Times cited: 75 -
High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations.
Nature communications.
2020
Academic Article
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Times cited: 49 -
Integrative pathway enrichment analysis of multivariate omics data.
Nature communications.
2020
Academic Article
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Times cited: 113 -
Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition.
Nature genetics.
2020
Academic Article
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Times cited: 244 -
Pan-cancer analysis of whole genomes.
Nature.
2020
Academic Article
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Times cited: 1721 -
Pathway and network analysis of more than 2500 whole cancer genomes.
Nature communications.
2020
Academic Article
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Times cited: 68 -
Patterns of somatic structural variation in human cancer genomes.
Nature.
2020
Academic Article
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Times cited: 450 -
Identification of Cancer Drivers at CTCF Insulators in 1,962 Whole Genomes.
Cell systems.
2019
Academic Article
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Times cited: 50 -
Identification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network.
Genome biology.
2017
Academic Article
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Times cited: 24 -
Detailed analysis of inversions predicted between two human genomes: errors, real polymorphisms, and their origin and population distribution.
Human molecular genetics.
2017
Academic Article
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Times cited: 8 -
Validation and genotyping of multiple human polymorphic inversions mediated by inverted repeats reveals a high degree of recurrence.
PLoS genetics.
2014
Academic Article
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Times cited: 20 -
InvFEST, a database integrating information of polymorphic inversions in the human genome.
Nucleic acids research.
2013
Academic Article
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Times cited: 35 -
PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data.
PloS one.
2013
Academic Article
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Times cited: 15