selected publications
- Antibiotic subclasses differentially perturb the gut microbiota in kidney transplant recipients. Frontiers in transplantation. 2024 Academic Article GET IT
- The Role of the Gut, Urine, and Vaginal Microbiomes in the Pathogenesis of Urinary Tract Infection in Women and Consideration of Microbiome Therapeutics. Open forum infectious diseases. 2024 Review GET IT
- The Gut Microbiome and Symptom Burden After Kidney Transplantation: An Overview and Research Opportunities. Biological research for nursing. 2024 Review GET IT
- A quantitative comparison of urine centrifugation and filtration for the isolation and analysis of urinary nucleic acid biomarkers. Scientific reports. 2024 Academic Article GET IT
- A Distinct Nasal Microbiota Signature in Peritoneal Dialysis Patients. Kidney360. 2023 Academic Article GET IT
- Evaluation of Immunocompetence and Biomarkers of Tolerance in Chimeric and Immunosuppression-free Kidney Allograft Recipients. Transplantation. 2023 Academic Article GET IT
- Unlocking the Potential of Bacteriophage to Prevent Recurrent Urinary Tract Infections after Kidney Transplantation. Antimicrobial agents and chemotherapy. 2023 Academic Article GET IT
- KIBRA upregulation increases susceptibility to glomerular injury and correlates with kidney function decline. JCI insight. 2023 Academic Article GET IT
- Characteristics of natural immunity to SARS-CoV-2 over time in wait-listed dialysis patients and recent kidney transplant recipients. Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association. 2022 Letter GET IT
- A metagenomic DNA sequencing assay that is robust against environmental DNA contamination. Nature communications. 2022 Academic Article GET IT
- Detection of infiltrating fibroblasts by single-cell transcriptomics in human kidney allografts. PloS one. 2022 Academic Article GET IT
- A Community-Based Education Program for Overactive Bladder in a Predominantly Minority Older Female Population: A Pilot Study. Urologia internationalis. 2022 Academic Article GET IT
- Metagenomics combined with activity-based proteomics point to gut bacterial enzymes that reactivate mycophenolate. Gut microbes. 2022 Academic Article GET IT
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Deep significance clustering: a novel approach for identifying risk-stratified and predictive patient subgroups.
Journal of the American Medical Informatics Association : JAMIA.
2021
Academic Article
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Times cited: 10 - Peritoneal Effluent Cell-Free DNA Sequencing in Peritoneal Dialysis Patients With and Without Peritonitis. Kidney medicine. 2021 Academic Article GET IT
- Measurement Biases Distort Cell-Free DNA Fragmentation Profiles and Define the Sensitivity of Metagenomic Cell-Free DNA Sequencing Assays. Clinical chemistry. 2021 Academic Article GET IT
- Kidney Allograft Function Is a Confounder of Urine Metabolite Profiles in Kidney Allograft Recipients. Metabolites. 2021 Academic Article GET IT
- FOXP3 mRNA Profile Prognostic of Acute T Cell-mediated Rejection and Human Kidney Allograft Survival. Transplantation. 2021 Academic Article GET IT
- Serum MicroRNA Transcriptomics and Acute Rejection or Recurrent Hepatitis C Virus in Human Liver Allograft Recipients: A Pilot Study. Transplantation. 2021 Academic Article GET IT
- Deep sequencing of DNA from urine of kidney allograft recipients to estimate donor/recipient-specific DNA fractions. PloS one. 2021 Academic Article GET IT
- Gut microbiota profiles and fecal beta-glucuronidase activity in kidney transplant recipients with and without post-transplant diarrhea. Clinical transplantation. 2021 Academic Article GET IT
- The Potential Role of the Gut Microbiota in Kidney Transplantation. Kidney360. 2021 Academic Article GET IT
- Colonization with Gastrointestinal Pathogens Prior to Hematopoietic Cell Transplantation and Associated Clinical Implications. Transplantation and cellular therapy. 2021 Academic Article GET IT
- Validation of a noninvasive prognostic signature for allograft failure following BK virus associated nephropathy. Clinical transplantation. 2021 Academic Article GET IT
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Gut commensal microbiota and decreased risk for Enterobacteriaceae bacteriuria and urinary tract infection.
Gut microbes.
2020
Academic Article
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Times cited: 50 -
COVID-19 outcomes in patients waitlisted for kidney transplantation and kidney transplant recipients.
American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.
2020
Academic Article
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Times cited: 70 -
Characteristics of Acute Kidney Injury in Hospitalized COVID-19 Patients in an Urban Academic Medical Center.
Clinical journal of the American Society of Nephrology : CJASN.
2020
Letter
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Times cited: 32 -
Kidney allograft recipients, immunosuppression, and coronavirus disease-2019: a report of consecutive cases from a New York City transplant center.
Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.
2020
Academic Article
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Times cited: 67 -
Urinary cell transcriptomics and acute rejection in human kidney allografts.
JCI insight.
2020
Academic Article
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Times cited: 26 -
Separating the signal from the noise in metagenomic cell-free DNA sequencing.
Microbiome.
2020
Academic Article
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Times cited: 34 - Avoiding infections in transplant recipients: does the gut microbiota have a key role?. Expert review of clinical immunology. 2020 Editorial Article GET IT
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Gut uropathogen abundance is a risk factor for development of bacteriuria and urinary tract infection.
Nature communications.
2019
Academic Article
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Times cited: 147 -
Gastrointestinal pathogen colonization and the microbiome in asymptomatic kidney transplant recipients.
Transplant infectious disease : an official journal of the Transplantation Society.
2019
Academic Article
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Times cited: 14 -
Butyrate-producing gut bacteria and viral infections in kidney transplant recipients: A pilot study.
Transplant infectious disease : an official journal of the Transplantation Society.
2019
Academic Article
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Times cited: 42 -
A cell-free DNA metagenomic sequencing assay that integrates the host injury response to infection.
Proceedings of the National Academy of Sciences of the United States of America.
2019
Academic Article
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Times cited: 50 -
Identification of Antibiotic Administration as a Potentially Novel Factor Associated With Tacrolimus Trough Variability in Kidney Transplant Recipients: A Preliminary Study.
Transplantation direct.
2019
Academic Article
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Times cited: 13 -
Landscape of innate immune system transcriptome and acute T cell-mediated rejection of human kidney allografts.
JCI insight.
2019
Academic Article
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Times cited: 34 -
Commensal Gut Bacteria Convert the Immunosuppressant Tacrolimus to Less Potent Metabolites.
Drug metabolism and disposition: the biological fate of chemicals.
2018
Academic Article
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Times cited: 96 -
Gut microbiota dysbiosis and diarrhea in kidney transplant recipients.
American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.
2018
Academic Article
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Times cited: 73 -
Urinary cell-free DNA is a versatile analyte for monitoring infections of the urinary tract.
Nature communications.
2018
Academic Article
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Times cited: 126 -
Single nucleotide variant counts computed from RNA sequencing and cellular traffic into human kidney allografts.
American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.
2018
Academic Article
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Times cited: 11 -
Urine biomarkers informative of human kidney allograft rejection and tolerance.
Human immunology.
2018
Information Resource
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Times cited: 10 -
Kidney allograft failure in the steroid-free immunosuppression era: A matched case-control study.
Clinical transplantation.
2017
Academic Article
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Times cited: 4 -
Exome Sequencing and Prediction of Long-Term Kidney Allograft Function.
PLoS computational biology.
2016
Academic Article
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Times cited: 44 -
Routine prophylaxis with proton pump inhibitors and post-transplant complications in kidney transplant recipients undergoing early corticosteroid withdrawal.
Clinical transplantation.
2016
Academic Article
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Times cited: 8 -
Development and validation of a prognostic index for allograft outcome in kidney recipients with transplant glomerulopathy.
Kidney international.
2016
Academic Article
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Times cited: 26 -
Epidemiology and outcomes of carbapenem-resistant Klebsiella pneumoniae bacteriuria in kidney transplant recipients.
Transplant infectious disease : an official journal of the Transplantation Society.
2015
Academic Article
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Times cited: 70 -
Urine Metabolite Profiles Predictive of Human Kidney Allograft Status.
Journal of the American Society of Nephrology : JASN.
2015
Academic Article
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Times cited: 55 -
Characteristics of Circulating Donor Human Leukocyte Antigen-specific Immunoglobulin G Antibodies Predictive of Acute Antibody-mediated Rejection and Kidney Allograft Failure.
Transplantation.
2015
Academic Article
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Times cited: 50 -
Gut microbiota and tacrolimus dosing in kidney transplantation.
PloS one.
2015
Academic Article
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Times cited: 148 -
Gut microbial community structure and complications after kidney transplantation: a pilot study.
Transplantation.
2014
Academic Article
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Times cited: 155 -
Circulating levels of 25-hydroxyvitamin D and acute cellular rejection in kidney allograft recipients.
Transplantation.
2014
Academic Article
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Times cited: 51 -
Allograft rejection and tubulointerstitial fibrosis in human kidney allografts: interrogation by urinary cell mRNA profiling.
Transplantation reviews (Orlando, Fla.).
2014
Information Resource
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Times cited: 8 -
Urinary cell mRNA profiles and differential diagnosis of acute kidney graft dysfunction.
Journal of the American Society of Nephrology : JASN.
2014
Academic Article
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Times cited: 39 -
Urinary cell mRNA profiles predictive of human kidney allograft status.
Immunological reviews.
2014
Information Resource
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Times cited: 41 -
Independent risk factors for urinary tract infection and for subsequent bacteremia or acute cellular rejection: a single-center report of 1166 kidney allograft recipients.
Transplantation.
2013
Academic Article
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Times cited: 123 -
Noninvasive prognostication of polyomavirus BK virus-associated nephropathy.
Transplantation.
2013
Academic Article
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Times cited: 21 -
HIV-infected kidney graft recipients managed with an early corticosteroid withdrawal protocol: clinical outcomes and messenger RNA profiles.
Transplantation.
2013
Academic Article
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Times cited: 13