Deng, Ruining

Publications

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selected publications

Data-driven nucleus subclassification on colon hematoxylin and eosin using style-transferred digital pathology. Journal of medical imaging (Bellingham, Wash.). 2024 Academic Article GET IT
Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures. Proceedings of SPIE--the International Society for Optical Engineering. 2024 Academic Article GET IT
Nucleus subtype classification using inter-modality learning. Proceedings of SPIE--the International Society for Optical Engineering. 2024 Academic Article GET IT
FNPC-SAM: Uncertainty-Guided False Negative/Positive Control for SAM on Noisy Medical Images. Proceedings of SPIE--the International Society for Optical Engineering. 2024 Academic Article GET IT
Cross-scale multi-instance learning for pathological image diagnosis. Medical image analysis. 2024 Academic Article GET IT
Times cited: 13
Robust fiber orientation distribution function estimation using deep constrained spherical deconvolution for diffusion-weighted magnetic resonance imaging. Journal of medical imaging (Bellingham, Wash.). 2024 Academic Article GET IT
Times cited: 2
Alleviating tiling effect by random walk sliding window in high-resolution histological whole slide image synthesis. Proceedings of machine learning research. 2024 Academic Article GET IT
Feasibility of Universal Anomaly Detection without Knowing the Abnormality in Medical Images. Medical image learning with limited and noisy data : second international workshop, MILLanD 2023, held in conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, proceedings. MILLanD (Workshop) : (2nd : 2023 : Vancouver, B.... 2023 Academic Article GET IT
Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-empowered Learning. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2023 Academic Article GET IT
Times cited: 2
Omni-Seg: A Scale-Aware Dynamic Network for Renal Pathological Image Segmentation. IEEE transactions on bio-medical engineering. 2023 Academic Article GET IT
Times cited: 12
Influence of Cell-type Ratio on Spatially Resolved Single-cell Transcriptomes using the Tangram Algorithm: Based on Implementation on Single-Cell and MxIF Data. Proceedings of SPIE--the International Society for Optical Engineering. 2023 Academic Article GET IT
An Accelerated Pipeline for Multi-label Renal Pathology Image Segmentation at the Whole Slide Image Level. Proceedings of SPIE--the International Society for Optical Engineering. 2023 Academic Article GET IT
Times cited: 1
An End-to-end Pipeline for 3D Slide-wise Multi-stain Renal Pathology Registration. Proceedings of SPIE--the International Society for Optical Engineering. 2023 Academic Article GET IT
Predicting Crohn's disease severity in the colon using mixed cell nucleus density from pseudo labels. Proceedings of SPIE--the International Society for Optical Engineering. 2023 Academic Article GET IT
Times cited: 1
Topological-Preserving Membrane Skeleton Segmentation in Multiplex Immunofluorescence Imaging. Proceedings of SPIE--the International Society for Optical Engineering. 2023 Academic Article GET IT
Deep Constrained Spherical Deconvolution for Robust Harmonization. Proceedings of SPIE--the International Society for Optical Engineering. 2023 Academic Article GET IT
Times cited: 2
Cross-scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images. Multiscale multimodal medical imaging : Third International Workshop, MMMI 2022, held in conjunction with MICCAI 2022, Singapore, September 22, 2022, proceedings. 2022 Academic Article GET IT
Times cited: 7
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning. The journal of machine learning for biomedical imaging. 2022 Academic Article GET IT
Dense Multi-Object 3D Glomerular Reconstruction and Quantification on 2D Serial Section Whole Slide Images. Proceedings of SPIE--the International Society for Optical Engineering. 2022 Academic Article GET IT
Times cited: 4
Circle Representation for Medical Object Detection. IEEE transactions on medical imaging. 2022 Academic Article GET IT
Times cited: 30
Map3D: Registration-Based Multi-Object Tracking on 3D Serial Whole Slide Images. IEEE transactions on medical imaging. 2021 Academic Article GET IT
Times cited: 10
ASIST: Annotation-free synthetic instance segmentation and tracking by adversarial simulations. Computers in biology and medicine. 2021 Academic Article GET IT
Times cited: 18
AI applications in renal pathology. Kidney international. 2021 Review GET IT
Times cited: 51
Instance segmentation for whole slide imaging: end-to-end or detect-then-segment. Journal of medical imaging (Bellingham, Wash.). 2021 Academic Article GET IT
Times cited: 11
CircleNet: Anchor-free Glomerulus Detection with Circle Representation. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2020 Academic Article GET IT
Times cited: 21

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Background

education and training

M.S., Vanderbilt University 22
B.S., East China University of Science and Technology (China) 2019
Ph.D. in Computer Science, School of Engineering 2021 - 2024
Ph.D. in Computer Science, School of Engineering 2021 - 2024

Contact

full name

Ruining Deng

primary email

rud4004@med.cornell.edu

VIVO Weill Cornell Medical College

Ruining Deng Instructor of Artificial Intelligence in Radiology

Publications

selected publications

Background

education and training

Contact

full name

primary email