selected publications
- Demonstration-based learning for few-shot biomedical named entity recognition under machine reading comprehension. Journal of biomedical informatics. 2024 Academic Article GET IT
- Development and Implementation of a Multicenter Registry for Resuscitation-Focused Transesophageal Echocardiography. Annals of emergency medicine. 2024 Academic Article GET IT
- A natural language processing approach to detect inconsistencies in death investigation notes attributing suicide circumstances. Communications medicine. 2024 Academic Article GET IT
- A framework for human evaluation of large language models in healthcare derived from literature review. NPJ digital medicine. 2024 Academic Article GET IT
- Author Correction: Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence modeling. 2024 GET IT
- Closing the gap between open source and commercial large language models for medical evidence summarization. NPJ digital medicine. 2024 Academic Article GET IT
- Large language models in biomedicine and health: current research landscape and future directions. Journal of the American Medical Informatics Association : JAMIA. 2024 Editorial Article GET IT
- Analyzing Social Factors to Enhance Suicide Prevention Across Population Groups. Proceedings. IEEE International Conference on Healthcare Informatics. 2024 Academic Article GET IT
- Improving Fairness of Automated Chest Radiograph Diagnosis by Contrastive Learning. Radiology. Artificial intelligence. 2024 Academic Article GET IT
- Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence modeling. NPJ digital medicine. 2024 Academic Article GET IT
- Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence modeling. 2024 GET IT
- Closing the gap between open-source and commercial large language models for medical evidence summarization. 2024 GET IT
- Hidden flaws behind expert-level accuracy of multimodal GPT-4 vision in medicine. NPJ digital medicine. 2024 Academic Article GET IT
- Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge. Medical image analysis. 2024 Academic Article GET IT
- Erratum for: Evaluating GPT-4V (GPT-4 with Vision) on Detection of Radiologic Findings on Chest Radiographs. 2024 GET IT
- Evaluating GPT-V4 (GPT-4 with Vision) on Detection of Radiologic Findings on Chest Radiographs. Radiology. 2024 Academic Article GET IT
- A survey of recent methods for addressing AI fairness and bias in biomedicine. Journal of biomedical informatics. 2024 Review GET IT
- Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias. Journal of biomedical informatics. 2024 Academic Article GET IT
- Leveraging generative AI for clinical evidence synthesis needs to ensure trustworthiness. Journal of biomedical informatics. 2024 Academic Article GET IT
- Decoding Suicide Decedent Profiles and Signs of Suicidal Intent Using Latent Class Analysis. JAMA psychiatry. 2024 Academic Article GET IT
- A span-based model for extracting overlapping PICO entities from RCT publications. Journal of the American Medical Informatics Association : JAMIA. 2024 Academic Article GET IT
- Retrieval augmented scientific claim verification. JAMIA open. 2024 Academic Article GET IT
- A survey of recent methods for addressing AI fairness and bias in biomedicine. 2024 GET IT
- Deep learning models to predict primary open-angle glaucoma. Stat (International Statistical Institute). 2024 Academic Article GET IT
- Confidence Score: A Data-Driven Measure for Inclusive Systematic Reviews Considering Unpublished Preprints. Journal of the American Medical Informatics Association : JAMIA. 2023 Academic Article GET IT
- Faithful AI in Medicine: A Systematic Review with Large Language Models and Beyond. 2023 GET IT
- Adopting and expanding ethical principles for generative artificial intelligence from military to healthcare. NPJ digital medicine. 2023 Review GET IT
- Automated classification of lay health articles using natural language processing: a case study on pregnancy health and postpartum depression. Frontiers in psychiatry. 2023 Academic Article GET IT
- Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge. 2023 GET IT
- Improving model fairness in image-based computer-aided diagnosis. Nature communications. 2023 Academic Article GET IT
- How Does Pruning Impact Long-Tailed Multi-label Medical Image Classifiers?. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2023 Academic Article GET IT
- Utilizing Longitudinal Chest X-Rays and Reports to Pre-fill Radiology Reports. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2023 Academic Article GET IT
- A scoping review on multimodal deep learning in biomedical images and texts. Journal of biomedical informatics. 2023 Review GET IT
- Evaluating large language models on medical evidence summarization. NPJ digital medicine. 2023 Academic Article GET IT
- How Does Pruning Impact Long-Tailed Multi-Label Medical Image Classifiers? 2023 GET IT
- Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses. Proceedings of the conference. Association for Computational Linguistics. Meeting. 2023 Academic Article GET IT
- A new deep learning framework to process Matrix-assisted Laser Desorption/Ionisation Mass Spectrometry Imaging (MALDI-MSI) data of Tissue Microarrays (TMAs). AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2023 Academic Article GET IT
- Evaluate underdiagnosis and overdiagnosis bias of deep learning model on primary open-angle glaucoma diagnosis in under-served populations. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2023 Academic Article GET IT
- Utilizing Longitudinal Chest X-Rays and Reports to Pre-Fill Radiology Reports. 2023 GET IT
- Evaluating GPT4 on Impressions Generation in Radiology Reports. Radiology. 2023 Academic Article GET IT
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AI-generated text may have a role in evidence-based medicine.
Nature medicine.
2023
Letter
GET IT
Times cited: 11 -
Comparing the effects of four common drug classes on the progression of mild cognitive impairment to dementia using electronic health records.
Scientific reports.
2023
Academic Article
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Times cited: 4 - How Good Is ChatGPT for Medication Evidence Synthesis?. Studies in health technology and informatics. 2023 Academic Article GET IT
- Enhancing thoracic disease detection using chest X-rays from PubMed Central Open Access. Computers in biology and medicine. 2023 Academic Article GET IT
- An NLP approach to identify SDoH-related circumstance and suicide crisis from death investigation narratives. Journal of the American Medical Informatics Association : JAMIA. 2023 Academic Article GET IT
- Editorial: Pattern recognition for healthcare analytics. Frontiers in digital health. 2023 Editorial Article GET IT
- Representing and Utilizing Clinical Textual Data for Real World Studies: An OHDSI Approach. Journal of biomedical informatics. 2023 Academic Article GET IT
- EvidenceMap: a three-level knowledge representation for medical evidence computation and comprehension. Journal of the American Medical Informatics Association : JAMIA. 2023 Academic Article GET IT
- Attend Who is Weak: Pruning-assisted Medical Image Localization under Sophisticated and Implicit Imbalances. IEEE Winter Conference on Applications of Computer Vision. IEEE Winter Conference on Applications of Computer Vision. 2023 Academic Article GET IT
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RoS-KD: A Robust Stochastic Knowledge Distillation Approach for Noisy Medical Imaging.
Proceedings. IEEE International Conference on Data Mining.
2023
Academic Article
GET IT
Times cited: 3 - Comparison of State-of-the-Art Neural Network Survival Models with the Pooled Cohort Equations for Cardiovascular Disease Risk Prediction. BMC medical research methodology. 2023 Academic Article GET IT
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Improving Cancer Care Communication: Identifying Sociodemographic Differences in Patient Portal Secure Messages Not Authored by the Patient.
Applied clinical informatics.
2023
Academic Article
GET IT
Times cited: 1 - Prediction of left ventricular ejection fraction changes in heart failure patients using machine learning and electronic health records: a multi-site study. Scientific reports. 2023 Academic Article GET IT
- Multi-scale Multi-structure Siamese Network (MMSNet) for Primary Open-Angle Glaucoma Prediction. Machine learning in medical imaging. MLMI (Workshop). 2022 Academic Article GET IT
- Predicting Age-related Macular Degeneration Progression with Longitudinal Fundus Images Using Deep Learning. Machine learning in medical imaging. MLMI (Workshop). 2022 Academic Article GET IT
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Identifying Nonpatient Authors of Patient Portal Secure Messages in Oncology: A Proof-of-Concept Demonstration of Natural Language Processing Methods.
JCO clinical cancer informatics.
2022
Academic Article
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Times cited: 4 - Topical and emotional expressions regarding extreme weather disasters on social media: a comparison of posts from official media and the public. Humanities & social sciences communications. 2022 Academic Article GET IT
- Radiomics-Guided Global-Local Transformer for Weakly Supervised Pathology Localization in Chest X-Rays. IEEE transactions on medical imaging. 2022 Academic Article GET IT
- Radiology Text Analysis System (RadText): Architecture and Evaluation. IEEE International Conference on Healthcare Informatics. IEEE International Conference on Healthcare Informatics. 2022 Academic Article GET IT
- Automated diagnosing primary open-angle glaucoma from fundus image by simulating human's grading with deep learning. Scientific reports. 2022 Academic Article GET IT
- Primary Open-Angle Glaucoma Diagnosis from Optic Disc Photographs Using a Siamese Network. Ophthalmology science. 2022 Academic Article GET IT
- Supervised Pretraining through Contrastive Categorical Positive Samplings to Improve COVID-19 Mortality Prediction. ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. 2022 Academic Article GET IT
- Design and validation of a FHIR-based EHR-driven phenotyping toolbox. Journal of the American Medical Informatics Association : JAMIA. 2022 Academic Article GET IT
- Trustworthy assertion classification through prompting. Journal of biomedical informatics. 2022 Academic Article GET IT
- Knowledge Graph Applications in Medical Imaging Analysis: A Scoping Review. Health data science. 2022 Academic Article GET IT
- Prior Knowledge Enhances Radiology Report Generation. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2022 Academic Article GET IT
- EchoGen: A New Benchmark Study on Generating Conclusions from Echocardiogram Notes. Proceedings of the conference. Association for Computational Linguistics. Meeting. 2022 Academic Article GET IT
- Multi-task deep learning-based survival analysis on the prognosis of late AMD using the longitudinal data in AREDS. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2022 Academic Article GET IT
- Using Radiomics as Prior Knowledge for Thorax Disease Classification and Localization in Chest X-rays. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2022 Academic Article GET IT
- Global-Local attention network with multi-task uncertainty loss for abnormal lymph node detection in MR images. Medical image analysis. 2022 Academic Article GET IT
- Classifying Cyber-Risky Clinical Notes by Employing Natural Language Processing. Proceedings of the ... Annual Hawaii International Conference on System Sciences. Annual Hawaii International Conference on System Sciences. 2022 Academic Article GET IT
- Primary Open-Angle Glaucoma Diagnosis From Optic Disc Photographs Using a Siamese Network. Ophthalmology Science. 2022 Academic Article GET IT
- Robust convolutional neural networks against adversarial attacks on medical images. Pattern Recognition. 2022 Academic Article GET IT
- Benchmarking Effectiveness and Efficiency of Deep Learning Models for Semantic Textual Similarity in the Clinical Domain: Validation Study. JMIR medical informatics. 2021 Academic Article GET IT
- RadBERT-CL: Factually-Aware Contrastive Learning For Radiology Report Classification. Proceedings of machine learning research. 2021 Academic Article GET IT
- A reference-free approach for cell type classification with scRNA-seq. iScience. 2021 Academic Article GET IT
- Multimodal, multitask, multiattention (M3) deep learning detection of reticular pseudodrusen: Toward automated and accessible classification of age-related macular degeneration. Journal of the American Medical Informatics Association : JAMIA. 2021 Academic Article GET IT
- Leveraging Deep Representations of Radiology Reports in Survival Analysis for Predicting Heart Failure Patient Mortality. Proceedings of the conference. Association for Computational Linguistics. North American Chapter. Meeting. 2021 Academic Article GET IT
- When text simplification is not enough: could a graph-based visualization facilitate consumers' comprehension of dietary supplement information?. JAMIA open. 2021 Academic Article GET IT
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NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature.
Scientific data.
2021
Academic Article
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Times cited: 41 -
Generalized Zero-shot Chest X-ray Diagnosis through Trait-Guided Multi-view Semantic Embedding with Self-training.
IEEE transactions on medical imaging.
2021
Academic Article
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Times cited: 1 - Detection of lymph nodes in T2 MRI using neural network ensembles. 2021 Conference Paper GET IT
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COVID-19-CT-CXR: A Freely Accessible and Weakly Labeled Chest X-Ray and CT Image Collection on COVID-19 From Biomedical Literature.
IEEE transactions on big data.
2020
Academic Article
GET IT
Times cited: 56 - Predicting risk of late age-related macular degeneration using deep learning. NPJ digital medicine. 2020 Academic Article GET IT
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Deep Learning Automated Detection of Reticular Pseudodrusen from Fundus Autofluorescence Images or Color Fundus Photographs in AREDS2.
Ophthalmology.
2020
Academic Article
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Times cited: 4 -
Automated abnormality classification of chest radiographs using deep convolutional neural networks.
NPJ digital medicine.
2020
Academic Article
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Times cited: 158 -
ML-Net: multi-label classification of biomedical texts with deep neural networks.
Journal of the American Medical Informatics Association : JAMIA.
2019
Academic Article
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Times cited: 105 -
A Deep Learning Approach for Automated Detection of Geographic Atrophy from Color Fundus Photographs.
Ophthalmology.
2019
Academic Article
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Times cited: 60 - A multi-task deep learning model for the classification of Age-related Macular Degeneration. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2019 Academic Article GET IT
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DeepSeeNet: A Deep Learning Model for Automated Classification of Patient-based Age-related Macular Degeneration Severity from Color Fundus Photographs.
Ophthalmology.
2018
Academic Article
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Times cited: 237 -
LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC.
Nucleic acids research.
2018
Academic Article
GET IT
Times cited: 94 - NegBio: a high-performance tool for negation and uncertainty detection in radiology reports. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2018 Academic Article GET IT
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Extracting chemical-protein relations with ensembles of SVM and deep learning models.
Database : the journal of biological databases and curation.
2018
Academic Article
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Times cited: 71 -
Improving chemical disease relation extraction with rich features and weakly labeled data.
Journal of cheminformatics.
2016
Academic Article
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Times cited: 69 -
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.
Database : the journal of biological databases and curation.
2016
Academic Article
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Times cited: 22 -
BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph.
Database : the journal of biological databases and curation.
2016
Academic Article
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Times cited: 5 -
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task.
Database : the journal of biological databases and curation.
2016
Academic Article
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Times cited: 148 -
miRTex: A Text Mining System for miRNA-Gene Relation Extraction.
PLoS computational biology.
2015
Academic Article
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Times cited: 42 -
A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems.
BMC bioinformatics.
2014
Academic Article
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Times cited: 22 -
BioC interoperability track overview.
Database : the journal of biological databases and curation.
2014
Information Resource
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Times cited: 13 -
iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system.
Database : the journal of biological databases and curation.
2014
Academic Article
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Times cited: 9 -
BioC: a minimalist approach to interoperability for biomedical text processing.
Database : the journal of biological databases and curation.
2013
Academic Article
GET IT
Times cited: 124