High throughput single-cell detection of multiplex CRISPR-edited gene modifications. Academic Article uri icon

Overview

abstract

  • CRISPR-Cas9 gene editing has transformed our ability to rapidly interrogate the functional impact of somatic mutations in human cancers. Droplet-based technology enables the analysis of Cas9-introduced gene edits in thousands of single cells. Using this technology, we analyze Ba/F3 cells engineered to express single or multiplexed loss-of-function mutations recurrent in chronic lymphocytic leukemia. Our approach reliably quantifies mutational co-occurrences, zygosity status, and the occurrence of Cas9 edits at single-cell resolution.

authors

  • ten Hacken, Elisa
  • Clement, Kendell
  • Li, Shuqiang
  • Hernández-Sánchez, María
  • Redd, Robert
  • Wang, Shu
  • Ruff, David
  • Gruber, Michaela
  • Baranowski, Kaitlyn
  • Jacob, Jose
  • Flynn, James
  • Jones, Keith W
  • Neuberg, Donna
  • Livak, Kenneth J
  • Pinello, Luca
  • Wu, Catherine J

publication date

  • October 20, 2020

Research

keywords

  • CRISPR-Cas Systems
  • Gene Editing
  • Leukemia, Lymphocytic, Chronic, B-Cell
  • Loss of Function Mutation
  • Single-Cell Analysis

Identity

PubMed Central ID

  • PMC7574538

Scopus Document Identifier

  • 85092902085

Digital Object Identifier (DOI)

  • 10.1186/s13059-020-02174-1

PubMed ID

  • 33081820

Additional Document Info

volume

  • 21

issue

  • 1