Genome biology
Journal
Overview
publication venue for
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Author Correction: Mutational signatures reveal the role of RAD52 in p53-independent p21-driven genomic instability.
2022
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Erratum to: Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures.
2017
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The impact of PCR duplication on RNAseq data generated using NovaSeq 6000, NovaSeq X, AVITI, and G4 sequencers..
26.
2025
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Transposable elements may enhance antiviral resistance in HIV-1 elite controllers..
26.
2025
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RExPRT: a machine learning tool to predict pathogenicity of tandem repeat loci..
25.
2024
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Ariadne: synthetic long read deconvolution using assembly graphs..
24.
2023
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BamQuery: a proteogenomic tool to explore the immunopeptidome and prioritize actionable tumor antigens..
24.
2023
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Back in 3D-a report on Genome Informatics 2022..
24.
2023
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REPAC: analysis of alternative polyadenylation from RNA-sequencing data..
24.
2023
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β-actin mediated H3K27ac changes demonstrate the link between compartment switching and enhancer-dependent transcriptional regulation..
24.
2023
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Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies..
23.
2022
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Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples..
23.
2022
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PEGR: a flexible management platform for reproducible epigenomic and genomic research..
23.
2022
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The SEQC2 epigenomics quality control (EpiQC) study..
22.
2021
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DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation..
22.
2021
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A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency..
22.
2021
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Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions..
22.
2021
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High throughput single-cell detection of multiplex CRISPR-edited gene modifications..
21.
2020
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Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae..
21.
2020
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TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcription..
21.
2020
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DeepMILO: a deep learning approach to predict the impact of non-coding sequence variants on 3D chromatin structure..
21.
2020
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VALOR2: characterization of large-scale structural variants using linked-reads..
21.
2020
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EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation..
20.
2019
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A comparison of automatic cell identification methods for single-cell RNA sequencing data..
20.
2019
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DNMT3A and TET1 cooperate to regulate promoter epigenetic landscapes in mouse embryonic stem cells..
19.
2018
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Mutational signatures reveal the role of RAD52 in p53-independent p21-driven genomic instability..
19.
2018
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Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications..
19.
2018
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Comprehensive benchmarking and ensemble approaches for metagenomic classifiers..
18.
2017
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Identification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network..
18.
2017
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Methicillin-resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice..
18.
2017
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Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures..
17.
2016
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A benchmark for RNA-seq quantification pipelines..
17.
2016
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Expanding the diversity of DNA base modifications with N⁶-methyldeoxyadenosine..
17.
2016
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Identification of low abundance microbiome in clinical samples using whole genome sequencing..
16.
2015
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Promoter-like epigenetic signatures in exons displaying cell type-specific splicing..
16.
2015
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The impact of read length on quantification of differentially expressed genes and splice junction detection..
16.
2015
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Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation..
16.
2015
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Intra-tumor genetic heterogeneity and alternative driver genetic alterations in breast cancers with heterogeneous HER2 gene amplification..
16.
2015
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Fast and scalable inference of multi-sample cancer lineages..
16.
2015
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Benchmarking mutation effect prediction algorithms using functionally validated cancer-related missense mutations..
15.
2014
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Dynamic evolution of clonal epialleles revealed by methclone..
15.
2014
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Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions..
15.
2014
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Unraveling the clonal hierarchy of somatic genomic aberrations..
15.
2014
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Deep sequencing reveals clonal evolution patterns and mutation events associated with relapse in B-cell lymphomas..
15.
2014
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Advancing clinical oncology through genome biology and technology..
15.
2014
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Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein..
15.
2014
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FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer..
15.
2014
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Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data..
14.
2013
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Crowdfunding genomics and bioinformatics..
14.
2013
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A microRNA network regulates proliferative timing and extracellular matrix synthesis during cellular quiescence in fibroblasts..
13.
2012
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Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data..
13.
2012
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The birth of the Epitranscriptome: deciphering the function of RNA modifications..
13.
2012
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Hypothesis-driven genomics pays off..
13.
2012
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methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles..
13.
2012
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Analysis of variation at transcription factor binding sites in Drosophila and humans..
13.
2012
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A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples..
13.
2012
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Faster sequencers, larger datasets, new challenges..
13.
2012
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Integrating diverse genomic data using gene sets..
12.
2011
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The one new journal we might actually need..
12.
2011
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Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development..
12.
2011
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The real cost of sequencing: higher than you think!.
12.
2011
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FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data..
11.
2010
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Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites..
11.
2010
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Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts..
10.
2009
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A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome..
10.
2009
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ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads..
10.
2009
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Wimps? What wimps?.
10.
2009
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What my genome told me--and what it didn't..
10.
2009
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Render unto Darwin..
10.
2009
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Guilt by association..
10.
2009
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Life is a Ponzi scheme..
10.
2009
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The wisdom, and madness, of crowds..
9.
2008
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Meta-morphosis..
9.
2008
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When bubbles burst..
9.
2008
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The story they missed..
9.
2008
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A seat at the table..
9.
2008
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A TATA binding protein regulatory network that governs transcription complex assembly..
8.
2007
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Co-localization of CENP-C and CENP-H to discontinuous domains of CENP-A chromatin at human neocentromeres..
8.
2007
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siRNA screen of the human signaling proteome identifies the PtdIns(3,4,5)P3-mTOR signaling pathway as a primary regulator of transferrin uptake..
8.
2007
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Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs..
7.
2006
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Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics..
7.
2006
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Changes in gene expression during the development of mammary tumors in MMTV-Wnt-1 transgenic mice..
6.
2005
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Eighty years ago..
6.
2005
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A matter of life and death..
6.
2005
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Tsunami..
6.
2005
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Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach..
6.
2005
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Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice..
4.
2003
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A piece of the action..
2.
2001
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Abundant protein domains occur in proportion to proteome size..
2.
2001
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Count me out..
1.
2000
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Seek and ye shall maybe find..
1.
2000
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Perpetual motion of the worst kind..
1.
2000
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The dark side..
1.
2000
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Dog eat dogma..
1.
2000
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The grail problem..
1.
2000
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Response to Zhou and Robinson..
16.
2015
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A WIMSical approach to decoding DNA methylation in myeloid leukemia.
2014
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Rising from the crypt: decreasing DNA methylation during differentiation of the small intestine.
2013
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Rising in the East.
2010
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The guards themselves.
2002
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An issue to remember.
2009
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The tech for the next decade: promises and challenges in genome biology.
2019
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Chromatin meets RNA polymerase II.
2007
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Developing a systems-level understanding of gene expression.
2007
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Recent advances in Drosophila genomics.
2004
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The Sequencing Quality Control 2 study: establishing community standards for sequencing in precision medicine..
22.
2021
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Too big to succeed?.
10.
2009
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Spatial omics technologies at multimodal and single cell/subcellular level.
2022
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Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin.
2022
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Experimental design and quantitative analysis of microbial community multiomics.
2017
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Predicting preferential DNA vector insertion sites: implications for functional genomics and gene therapy.
2007
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Canonical Wnt signaling: high-throughput RNAi widens the path.
2005
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Genome-wide analysis of protein-DNA interactions in living cells.
2001
Identity
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Linking ISSN
Electronic International Standard Serial Number (EISSN)