Genome biology

publication venue for

Decoding exon inclusion in the human brain reveals more divergent splicing mechanisms in neurons than glia.. 27. 2026
Highly accurate prophage island detection with PIDE.. 26. 2025
Transposable elements may enhance antiviral resistance in HIV-1 elite controllers.. 26. 2025
RExPRT: a machine learning tool to predict pathogenicity of tandem repeat loci.. 25. 2024
Ariadne: synthetic long read deconvolution using assembly graphs.. 24. 2023
BamQuery: a proteogenomic tool to explore the immunopeptidome and prioritize actionable tumor antigens.. 24. 2023
Back in 3D-a report on Genome Informatics 2022.. 24. 2023
REPAC: analysis of alternative polyadenylation from RNA-sequencing data.. 24. 2023
PEGR: a flexible management platform for reproducible epigenomic and genomic research.. 23. 2022
The SEQC2 epigenomics quality control (EpiQC) study.. 22. 2021
Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions.. 22. 2021
High throughput single-cell detection of multiplex CRISPR-edited gene modifications.. 21. 2020
Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae.. 21. 2020
Sampling time-dependent artifacts in single-cell genomics studies.. 21. 2020
DeepMILO: a deep learning approach to predict the impact of non-coding sequence variants on 3D chromatin structure.. 21. 2020
VALOR2: characterization of large-scale structural variants using linked-reads.. 21. 2020
EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation.. 20. 2019
A comparison of automatic cell identification methods for single-cell RNA sequencing data.. 20. 2019
Single-cell transcriptomics unveils gene regulatory network plasticity.. 20. 2019
DNMT3A and TET1 cooperate to regulate promoter epigenetic landscapes in mouse embryonic stem cells.. 19. 2018
Mutational signatures reveal the role of RAD52 in p53-independent p21-driven genomic instability.. 19. 2018
Identification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network.. 18. 2017
Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures.. 17. 2016
Expanding the diversity of DNA base modifications with N⁶-methyldeoxyadenosine.. 17. 2016
Identification of low abundance microbiome in clinical samples using whole genome sequencing.. 16. 2015
Promoter-like epigenetic signatures in exons displaying cell type-specific splicing.. 16. 2015
Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation.. 16. 2015
Fast and scalable inference of multi-sample cancer lineages.. 16. 2015
Dynamic evolution of clonal epialleles revealed by methclone.. 15. 2014
Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions.. 15. 2014
Unraveling the clonal hierarchy of somatic genomic aberrations.. 15. 2014
Deep sequencing reveals clonal evolution patterns and mutation events associated with relapse in B-cell lymphomas.. 15. 2014
Advancing clinical oncology through genome biology and technology.. 15. 2014
Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein.. 15. 2014
FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer.. 15. 2014
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data.. 14. 2013
A microRNA network regulates proliferative timing and extracellular matrix synthesis during cellular quiescence in fibroblasts.. 13. 2012
Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data.. 13. 2012
The birth of the Epitranscriptome: deciphering the function of RNA modifications.. 13. 2012
Hypothesis-driven genomics pays off.. 13. 2012
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles.. 13. 2012
Analysis of variation at transcription factor binding sites in Drosophila and humans.. 13. 2012
Out of Africa.. 13. 2012
The dog particle.. 13. 2012
Apocalypse now?. 13. 2012
Economies of scale.. 13. 2012
Faster sequencers, larger datasets, new challenges.. 13. 2012
Goodbye, Columbus.. 13. 2012
The columnist manifesto.. 12. 2011
Dominoes.. 12. 2011
Bailing out.. 12. 2011
Integrating diverse genomic data using gene sets.. 12. 2011
The one new journal we might actually need.. 12. 2011
Nothing to do and all day to do it in.. 12. 2011
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.. 12. 2011
The real cost of sequencing: higher than you think!. 12. 2011
Food of the dogs.. 12. 2011
Risky business.. 12. 2011
The blue marble.. 12. 2011
The walking dead.. 12. 2011
Preserving some sanity.. 12. 2011
The long and the short of it.. 11. 2010
Every dog has his day in court.. 11. 2010
A Faustian bargain.. 11. 2010
FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data.. 11. 2010
Shadows on the wall.. 11. 2010
Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites.. 11. 2010
The past is a foreign country.. 11. 2010
Hand-made biology.. 11. 2010
And they said it wouldn't last... 11. 2010
The devil's in the details.. 11. 2010
No stone unturned.. 11. 2010
Lost in translation.. 11. 2010
When the pie is too small.. 11. 2010
A harsh climate.. 10. 2009
The dog days of autumn.. 10. 2009
A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome.. 10. 2009
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads.. 10. 2009
Wimps? What wimps?. 10. 2009
What my genome told me--and what it didn't.. 10. 2009
Render unto Darwin.. 10. 2009
Guilt by association.. 10. 2009
Life is a Ponzi scheme.. 10. 2009
The wisdom, and madness, of crowds.. 9. 2008
Meta-morphosis.. 9. 2008
When bubbles burst.. 9. 2008
Biodefense versus bioterrorism.. 9. 2008
Having an impact (factor).. 9. 2008
It is alive.. 9. 2008
The new Manichaeans.. 9. 2008
Not debatable.. 9. 2008
The right to be wrong.. 9. 2008
The story they missed.. 9. 2008
A seat at the table.. 9. 2008
A TATA binding protein regulatory network that governs transcription complex assembly.. 8. 2007
A day in the life of a genome biologist in the not-too-distant future.. 8. 2007
An idea whose time has gone.. 8. 2007
And the second shall be first.. 8. 2007
Co-localization of CENP-C and CENP-H to discontinuous domains of CENP-A chromatin at human neocentromeres.. 8. 2007
It can't happen here--can it?. 8. 2007
Jumping the shark.. 8. 2007
My worries are no longer behind me.. 8. 2007
Strange days.. 8. 2007
They fought the law and the law won.. 8. 2007
What if Watson had said "Apes evolved from man"?. 8. 2007
siRNA screen of the human signaling proteome identifies the PtdIns(3,4,5)P3-mTOR signaling pathway as a primary regulator of transferrin uptake.. 8. 2007
Transformation.. 7. 2006
Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs.. 7. 2006
The next epidemic.. 7. 2006
Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.. 7. 2006
The system is broken.. 7. 2006
Sweden has the right idea.. 7. 2006
Foxes and hounds.. 6. 2006
A model worth considering?. 7. 2006
Do the math.. 7. 2006
Facts and figures.. 7. 2006
Instructions for repair.. 7. 2006
Senior moments.. 7. 2006
The ninth wave.. 7. 2006
H5N1.. 6. 2005
Changes in gene expression during the development of mammary tumors in MMTV-Wnt-1 transgenic mice.. 6. 2005
Half right.. 6. 2005
Trinity.. 6. 2005
The life aquatic.. 6. 2005
Eighty years ago.. 6. 2005
How may you help me?. 6. 2005
A matter of life and death.. 6. 2005
Who owns the data?. 6. 2005
Tsunami.. 6. 2005
Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach.. 6. 2005
Color blind.. 5. 2004
The emperor's new shibboleth.. 5. 2004
Twilight of a hero.. 5. 2004
Fame is a bubble, but not for some.. 5. 2004
A drop in the bucket.. 5. 2004
The ascent of man?. 5. 2004
Doctor Dunsel.. 5. 2004
Good chemistry.. 5. 2004
Bad chemistry.. 5. 2004
Live and let diet.. 5. 2003
For the good of the state.. 4. 2003
Sleeping dogs.. 4. 2003
The usual suspects.. 4. 2003
The road worrier.. 4. 2003
Galileo's stepchildren.. 4. 2003
A new recruit for the army of the men of death.. 4. 2003
Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice.. 4. 2003
Ira.. 4. 2003
War and peace.. 4. 2003
Judgement call.. 4. 2003
Funky, not junky.. 4. 2003
Everything I need to know about genomics, I learned from Yogi Berra.. 4. 2002
An Asilomar moment.. 3. 2002
Fish tale.. 3. 2002
No place like Ome.. 3. 2002
Our own petards.. 3. 2002
Grain of truth.. 3. 2002
What's in a name?. 3. 2002
The father of us all.. 3. 2002
A christmas carol.. 3. 2001
A piece of the action.. 2. 2001
Winter, plague and pestilence.. 2. 2001
Abundant protein domains occur in proportion to proteome size.. 2. 2001
Design by necessity.. 2. 2001
Model behavior.. 2. 2001
Location, location, location.. 2. 2001
The Rosetta stone.. 2. 2001
The slide rule and the calculator.. 2. 2001
Size doesn't matter.. 2. 2001
Homologuephobia.. 2. 2001
Count me out.. 1. 2000
Seek and ye shall maybe find.. 1. 2000
Perpetual motion of the worst kind.. 1. 2000
The dark side.. 1. 2000
Dog eat dogma.. 1. 2000
The grail problem.. 1. 2000
Author Correction: Mutational signatures reveal the role of RAD52 in p53-independent p21-driven genomic instability.. 23. 2022
Author Correction: The SEQC2 epigenomics quality control (EpiQC) study.. 22. 2021
Erratum to: Unraveling the clonal hierarchy of somatic genomic aberrations.. 18. 2017
Erratum to: Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures.. 18. 2017
Erratum to: Promoter-like epigenetic signatures in exons displaying cell type-specific splicing.. 17. 2016
Erratum to: Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data.. 16. 2015
Response to Zhou and Robinson.. 16. 2015
A WIMSical approach to decoding DNA methylation in myeloid leukemia.. 15. 2014
Rising from the crypt: decreasing DNA methylation during differentiation of the small intestine.. 14. 2013
A case of the flu.. 13. 2012
There is a sanity clause.. 12. 2011
Rising in the East.. 11. 2010
Advice and dissent.. 10. 2009
An issue to remember.. 10. 2009
The guards themselves.. 3. 2002
The tech for the next decade: promises and challenges in genome biology. 2019
Learning to swim in a sea of genomic data. 2013
Chromatin meets RNA polymerase II. 2007
Developing a systems-level understanding of gene expression. 2007
Recent advances in Drosophila genomics. 2004
In praise of model organisms.. 12. 2011
Too big to succeed?. 10. 2009
Medicine man.. 8. 2007
Feet in mouth disease.. 6. 2005
SARS-CoV-2 wastewater genomic surveillance: approaches, challenges, and opportunities. 2026
Spatial omics technologies at multimodal and single cell/subcellular level. 2022
Predicting preferential DNA vector insertion sites: implications for functional genomics and gene therapy. 2007
Canonical Wnt signaling: high-throughput RNAi widens the path. 2005
Pharmacogenomics arrives. 2004
Still no flying cars. 2003
Genome-wide analysis of protein-DNA interactions in living cells. 2001
Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin. 2022
Experimental design and quantitative analysis of microbial community multiomics. 2017

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Genome biology Journal

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