selected publications
- Closing the gap between open source and commercial large language models for medical evidence summarization. NPJ digital medicine. 2024 Academic Article GET IT
- Closing the gap between open-source and commercial large language models for medical evidence summarization. 2024 GET IT
- Understanding enterprise data warehouses to support clinical and translational research: impact, sustainability, demand management, and accessibility. Journal of the American Medical Informatics Association : JAMIA. 2024 Academic Article GET IT
- Linking Patient Encounters across Primary and Ancillary Electronic Health Record Systems: A Comparison of Two Approaches. ACI open. 2024 Academic Article GET IT
- Comparative Merits of Available Mortality Data Sources for Clinical Research. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2024 Academic Article GET IT
- Enhancing paranasal sinus disease detection with AutoML: efficient AI development and evaluation via magnetic resonance imaging. European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery. 2024 Academic Article GET IT
- A method to automate the discharge summary hospital course for neurology patients. Journal of the American Medical Informatics Association : JAMIA. 2023 Academic Article GET IT
- Maturity in enterprise data warehouses for research operations: Analysis of a pilot study. Journal of clinical and translational science. 2023 Academic Article GET IT
- Special Section on Patient Engagement in Informatics: A RE-AIM evaluation of a visualization-based electronic patient-reported outcomes system. Applied clinical informatics. 2023 Academic Article GET IT
- Portability of natural language processing methods to detect suicidality from clinical text in US and UK electronic health records. Journal of affective disorders reports. 2022 Academic Article GET IT
- A Day-to-Day Approach for Automating the Hospital Course Section of the Discharge Summary. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2022 Academic Article GET IT
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An architecture for research computing in health to support clinical and translational investigators with electronic patient data.
Journal of the American Medical Informatics Association : JAMIA.
2022
Academic Article
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Times cited: 9 - Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative. Journal of the American Medical Informatics Association : JAMIA. 2022 Academic Article GET IT
- Understanding enterprise data warehouses to support clinical and translational research: enterprise information technology relationships, data governance, workforce, and cloud computing. Journal of the American Medical Informatics Association : JAMIA. 2022 Academic Article GET IT
- Assessment of structured data elements for social risk factors. The American journal of managed care. 2022 Academic Article GET IT
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A Comparative Analysis of the Respiratory Subscore of the Sequential Organ Failure Assessment Scoring System.
Annals of the American Thoracic Society.
2021
Academic Article
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Times cited: 10 -
Comparing automated vs. manual data collection for COVID-specific medications from electronic health records.
International journal of medical informatics.
2021
Academic Article
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Times cited: 13 -
Automated Extraction of Tumor Staging and Diagnosis Information From Surgical Pathology Reports.
JCO clinical cancer informatics.
2021
Academic Article
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Times cited: 10 -
Identifying organ dysfunction trajectory-based subphenotypes in critically ill patients with COVID-19.
Scientific reports.
2021
Academic Article
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Times cited: 20 -
Critical carE Database for Advanced Research (CEDAR): An automated method to support intensive care units with electronic health record data.
Journal of biomedical informatics.
2021
Academic Article
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Times cited: 18 -
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.
Nature communications.
2021
Academic Article
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Times cited: 89 -
Using weak supervision and deep learning to classify clinical notes for identification of current suicidal ideation.
Journal of psychiatric research.
2021
Academic Article
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Times cited: 41 - Extracting Social Determinants of Health from Electronic Health Records using Natural Language Processing: A Systematic Review. 2021 Article
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A Method to Improve Availability and Quality of Patient Race Data in an Electronic Health Record System.
Applied clinical informatics.
2020
Academic Article
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Times cited: 12 -
Utilizing electronic health data and machine learning for the prediction of 30-day unplanned readmission or all-cause mortality in heart failure.
Cardiovascular digital health journal.
2020
Academic Article
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Times cited: 7 -
COVID-19 Viral and Serology Testing in New York City Health Care Workers.
American journal of clinical pathology.
2020
Academic Article
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Times cited: 10 -
Brain Imaging of Patients with COVID-19: Findings at an Academic Institution during the Height of the Outbreak in New York City.
AJNR. American journal of neuroradiology.
2020
Academic Article
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Times cited: 87 -
Obesity and COVID-19 in New York City: A Retrospective Cohort Study.
Annals of internal medicine.
2020
Letter
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Times cited: 68 -
Risk of Ischemic Stroke in Patients With Coronavirus Disease 2019 (COVID-19) vs Patients With Influenza.
JAMA neurology.
2020
Academic Article
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Times cited: 454 -
Understanding enterprise data warehouses to support clinical and translational research.
Journal of the American Medical Informatics Association : JAMIA.
2020
Academic Article
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Times cited: 22 - Characterizing Basic and Complex Usage of i2b2 at an Academic Medical Center. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2020 Academic Article GET IT
- Mapping Local Biospecimen Records to the OMOP Common Data Model. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2020 Academic Article GET IT
- Replacing Paper Informed Consent with Electronic Informed Consent for Research in Academic Medical Centers: A Scoping Review. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2020 Academic Article GET IT
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Clinical Characteristics of Covid-19 in New York City.
The New England journal of medicine.
2020
Letter
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Times cited: 1649 -
Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2020
Academic Article
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Times cited: 15 -
Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation.
Journal of the American Medical Informatics Association : JAMIA.
2019
Academic Article
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Times cited: 47 -
Relationship between left atrial volume and ischemic stroke subtype.
Annals of clinical and translational neurology.
2019
Academic Article
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Times cited: 23 - A Method for Integrating Healthcare Provider Organization and Research Sponsor Systems and Workflows to Support Large-Scale Studies. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2019 Academic Article GET IT
- Evaluation of a REDCap-based Workflow for Supporting Federal Guidance for Electronic Informed Consent. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2019 Academic Article GET IT
- Implementation of Informatics to Support the NIH All of Us Research Program in a Healthcare Provider Organization. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2019 Academic Article GET IT
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Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2018
Academic Article
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Times cited: 15 -
Design and Implementation of a Secure Computing Environment for Analysis of Sensitive Data at an Academic Medical Center.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2018
Academic Article
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Times cited: 5 -
A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments.
Journal of the American Medical Informatics Association : JAMIA.
2018
Academic Article
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Times cited: 23 -
A scalable method for supporting multiple patient cohort discovery projects using i2b2.
Journal of biomedical informatics.
2018
Academic Article
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Times cited: 1 - CATCH-KB: Establishing a Pharmacogenomics Variant Repository for Chemotherapy-Induced Cardiotoxicity. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2018 Academic Article GET IT
- Evaluating Generalizability of a Biospecimen Informatics Approach: Support for Local Requirements and Best Practices. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2018 Academic Article GET IT
- From Sour Grapes to Low-Hanging Fruit: A Case Study Demonstrating a Practical Strategy for Natural Language Processing Portability. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2018 Academic Article GET IT
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Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2018
Academic Article
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Times cited: 36 - Generalizable Middleware to Support Use of REDCap Dynamic Data Pull for Integrating Clinical and Research Data. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2017 Academic Article GET IT
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Adoption of clinical data exchange in community settings: a comparison of two approaches.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2014
Academic Article
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Times cited: 3 -
Changing the research landscape: the New York City Clinical Data Research Network.
Journal of the American Medical Informatics Association : JAMIA.
2014
Academic Article
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Times cited: 68 - Implementing a Clinical Research Management System: One Institution's Successful Approach Following Previous Failures. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2014 Academic Article GET IT
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Association between use of a health information exchange system and hospital admissions.
Applied clinical informatics.
2014
Academic Article
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Times cited: 55 -
Implementing unique device identification in electronic health record systems: organizational, workflow, and technological challenges.
Medical care.
2014
Academic Article
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Times cited: 10 -
Patient encounters and care transitions in one community supported by automated query-based health information exchange.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2013
Academic Article
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Times cited: 13 -
Using a health information exchange system for imaging information: patterns and predictors.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2013
Academic Article
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Times cited: 7 -
Challenges, alternatives, and paths to sustainability for health information exchange efforts.
Journal of medical systems.
2013
Academic Article
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Times cited: 46 -
Health information exchange system usage patterns in three communities: practice sites, users, patients, and data.
International journal of medical informatics.
2013
Academic Article
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Times cited: 40 -
Push and pull: physician usage of and satisfaction with health information exchange.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2012
Academic Article
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Times cited: 24 -
Barriers and facilitators to the use of computer-based intensive insulin therapy.
International journal of medical informatics.
2011
Academic Article
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Times cited: 25 -
Increasing blood glucose variability heralds hypoglycemia in the critically ill.
The Journal of surgical research.
2011
Academic Article
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Times cited: 24 -
Characteristics and effects of nurse dosing over-rides on computer-based intensive insulin therapy protocol performance.
Journal of the American Medical Informatics Association : JAMIA.
2011
Academic Article
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Times cited: 15 -
Peers, regulators, and professions: the influence of organizations in health information technology adoption.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2010
Academic Article
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Times cited: 2 - Evaluation of Computerized Free Text Sign-Out Notes: Baseline Understanding and Recommendations. Applied clinical informatics. 2010 Academic Article GET IT
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Effects of blood glucose transcription mismatches on a computer-based intensive insulin therapy protocol.
Intensive care medicine.
2010
Academic Article
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Times cited: 14 - Peers, regulators, and professions: the influence of organizations in intensive insulin therapy adoption. Quality management in health care. 2009 Academic Article GET IT
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Analysis of a computerized sign-out tool: identification of unanticipated uses and contradictory content.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2007
Academic Article
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Times cited: 10 -
The Success Factor Profile for clinical computer innovation.
Studies in health technology and informatics.
2004
Academic Article
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Times cited: 16