selected publications
- Comparative brain metabolomics reveals shared and distinct metabolic alterations in Alzheimer's disease and progressive supranuclear palsy. Alzheimer's & dementia : the journal of the Alzheimer's Association. 2024 Academic Article GET IT
- AutoFocus: a hierarchical framework to explore multi-omic disease associations spanning multiple scales of biomolecular interaction. Communications biology. 2024 Academic Article GET IT
- A roadmap to the molecular human linking multiomics with population traits and diabetes subtypes. Nature communications. 2024 Academic Article GET IT
- Serum and CSF metabolomics analysis shows Mediterranean Ketogenic Diet mitigates risk factors of Alzheimer's disease. NPJ metabolic health and disease. 2024 Academic Article GET IT
- Bidirectional modulation of TCA cycle metabolites and anaplerosis by metformin and its combination with SGLT2i. Cardiovascular diabetology. 2024 Academic Article GET IT
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Secretome profiling reveals acute changes in oxidative stress, brain homeostasis, and coagulation following short-duration spaceflight.
Nature communications.
2024
Academic Article
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Times cited: 10 - The Space Omics and Medical Atlas (SOMA) and international astronaut biobank. Nature. 2024 Academic Article GET IT
- Metabolomics profiling reveals distinct, sex-specific signatures in serum and brain metabolomes in mouse models of Alzheimer's disease. Alzheimer's & dementia : the journal of the Alzheimer's Association. 2024 Academic Article GET IT
- Gut bacteria-derived serotonin promotes immune tolerance in early life. Science immunology. 2024 Academic Article GET IT
- Cysteine induces mitochondrial reductive stress in glioblastoma through hydrogen peroxide production. Proceedings of the National Academy of Sciences of the United States of America. 2024 Academic Article GET IT
- Individual bioenergetic capacity as a potential source of resilience to Alzheimer's disease. 2024 GET IT
- Metabolomics profiling reveals distinct, sex-specific signatures in the serum and brain metabolomes in the mouse models of Alzheimer's disease. 2023 GET IT
- A Modified Mediterranean Ketogenic Diet mitigates modifiable risk factors of Alzheimer's Disease: a serum and CSF-based metabolic analysis. 2023 GET IT
- Plasma metabolomics profiling of 580 patients from an Early Detection Research Network prostate cancer cohort. Scientific data. 2023 Academic Article GET IT
- Breast adipose tissue-derived extracellular vesicles from obese women alter tumor cell metabolism. EMBO reports. 2023 Academic Article GET IT
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Interplay of Metabolome and Gut Microbiome in Individuals With Major Depressive Disorder vs Control Individuals.
JAMA psychiatry.
2023
Academic Article
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Times cited: 41 -
Urine-based multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.
Molecular medicine (Cambridge, Mass.).
2023
Academic Article
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Times cited: 7 - rox: A Statistical Model for Regression with Missing Values. Metabolites. 2023 Academic Article GET IT
- Improved Macro- and Micronutrient Supply for Favorable Growth and Metabolomic Profile with Standardized Parenteral Nutrition Solutions for Very Preterm Infants. Nutrients. 2022 Academic Article GET IT
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Multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.
PLoS pathogens.
2022
Academic Article
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Times cited: 14 - Authors' Reply. The American journal of pathology. 2022 Letter GET IT
- Microbes Contribute to Chemopreventive Efficacy, Intestinal Tumorigenesis and the Metabolome. Cancer prevention research (Philadelphia, Pa.). 2022 Academic Article GET IT
- The landscape of metabolic brain alterations in Alzheimer's disease. Alzheimer's & dementia : the journal of the Alzheimer's Association. 2022 Academic Article GET IT
- Variational autoencoders learn transferrable representations of metabolomics data. Communications biology. 2022 Academic Article GET IT
- Mitonuclear genotype remodels the metabolic and microenvironmental landscape of Hürthle cell carcinoma. Science advances. 2022 Academic Article GET IT
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Integrative metabolomic and proteomic signatures define clinical outcomes in severe COVID-19.
iScience.
2022
Academic Article
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Times cited: 6 - Validation of disease-specific biomarkers for the early detection of bronchopulmonary dysplasia. Pediatric research. 2022 Academic Article GET IT
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Angiopoietin 2 Is Associated with Vascular Necroptosis Induction in Coronavirus Disease 2019 Acute Respiratory Distress Syndrome.
The American journal of pathology.
2022
Academic Article
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Times cited: 18 - Dihydroceramide- and ceramide-profiling provides insights into human cardiometabolic disease etiology. Nature communications. 2022 Academic Article GET IT
- Identification of Robust Protein Associations With COVID-19 Disease Based on Five Clinical Studies. Frontiers in immunology. 2022 Academic Article GET IT
- Metabolic and Immune Markers for Precise Monitoring of COVID-19 Severity and Treatment. Frontiers in immunology. 2022 Academic Article GET IT
- Integrative metabolomics-genomics approach reveals key metabolic pathways and regulators of Alzheimer's disease. Alzheimer's & dementia : the journal of the Alzheimer's Association. 2021 Academic Article GET IT
- The metabolic adaptation evoked by arginine enhances the effect of radiation in brain metastases. Science advances. 2021 Academic Article GET IT
- maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines. Bioinformatics (Oxford, England). 2021 Academic Article GET IT
- Diet-induced alteration of intestinal stem cell function underlies obesity and prediabetes in mice. Nature metabolism. 2021 Academic Article GET IT
- SGI: Automatic clinical subgroup identification in omics datasets. Bioinformatics (Oxford, England). 2021 Academic Article GET IT
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Association of circulating cell-free double-stranded DNA and metabolic derangements in idiopathic pulmonary fibrosis.
Thorax.
2021
Academic Article
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Times cited: 8 -
Oncogenic HSP90 Facilitates Metabolic Alterations in Aggressive B-cell Lymphomas.
Cancer research.
2021
Academic Article
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Times cited: 18 - A metabolome-wide association study in the general population reveals decreased levels of serum laurylcarnitine in people with depression. Molecular psychiatry. 2021 Academic Article GET IT
- Comparison of genetic risk prediction models to improve prediction of coronary heart disease in two large cohorts of the MONICA/KORA study. Genetic epidemiology. 2021 Academic Article GET IT
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The Colorectal Cancer Lipidome: Identification of a Robust Tumor-Specific Lipid Species Signature.
Gastroenterology.
2021
Academic Article
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Times cited: 1 -
Seasonal Regulation of Metabolism: The Effect of Wintertime Fasting and Autumnal Fattening on Key Central Regulators of Metabolism and the Metabolic Profile of the Raccoon Dog (Nyctereutes Procyonoides).
International journal of molecular sciences.
2021
Academic Article
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Times cited: 3 -
A Panel of 6 Biomarkers Significantly Improves the Prediction of Type 2 Diabetes in the MONICA/KORA Study Population.
The Journal of clinical endocrinology and metabolism.
2021
Academic Article
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Times cited: 13 -
Exogenous and Endogenous Sources of Serine Contribute to Colon Cancer Metabolism, Growth, and Resistance to 5-Fluorouracil.
Cancer research.
2021
Academic Article
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Times cited: 67 -
A Workflow for Missing Values Imputation of Untargeted Metabolomics Data.
Metabolites.
2020
Academic Article
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Times cited: 20 -
Multi-omics integration in biomedical research - A metabolomics-centric review.
Analytica chimica acta.
2020
Information Resource
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Times cited: 134 -
A strategy to incorporate prior knowledge into correlation network cutoff selection.
Nature communications.
2020
Academic Article
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Times cited: 14 -
Systematic Evaluation of Normalization Methods for Glycomics Data Based on Performance of Network Inference.
Metabolites.
2020
Academic Article
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Times cited: 12 -
Proteome-wide assessment of diabetes mellitus in Qatari identifies IGFBP-2 as a risk factor already with early glycaemic disturbances.
Archives of biochemistry and biophysics.
2020
Academic Article
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Times cited: 2 -
Sex and APOE ε4 genotype modify the Alzheimer's disease serum metabolome.
Nature communications.
2020
Academic Article
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Times cited: 105 -
Associations between adipose tissue volume and small molecules in plasma and urine among asymptomatic subjects from the general population.
Scientific reports.
2020
Academic Article
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Times cited: 8 -
A multi-source data integration approach reveals novel associations between metabolites and renal outcomes in the German Chronic Kidney Disease study.
Scientific reports.
2019
Academic Article
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Times cited: 14 -
Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS).
Metabolites.
2019
Academic Article
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Times cited: 30 -
Characterization of Bulk Phosphatidylcholine Compositions in Human Plasma Using Side-Chain Resolving Lipidomics.
Metabolites.
2019
Academic Article
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Times cited: 17 - Dynamic modelling of an ACADS genotype in fatty acid oxidation - Application of cellular models for the analysis of common genetic variants. PloS one. 2019 Academic Article GET IT
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Common patterns of gene regulation associated with Cesarean section and the development of islet autoimmunity - indications of immune cell activation.
Scientific reports.
2019
Academic Article
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Times cited: 5 -
A Novel Metabolic Signature To Predict the Requirement of Dialysis or Renal Transplantation in Patients with Chronic Kidney Disease.
Journal of proteome research.
2019
Academic Article
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Times cited: 6 -
MoDentify: phenotype-driven module identification in metabolomics networks at different resolutions.
Bioinformatics (Oxford, England).
2019
Academic Article
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Times cited: 14 -
Intermuscular adipose tissue directly modulates skeletal muscle insulin sensitivity in humans.
American journal of physiology. Endocrinology and metabolism.
2019
Academic Article
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Times cited: 107 -
A network-based conditional genetic association analysis of the human metabolome.
GigaScience.
2018
Academic Article
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Times cited: 11 -
Comparison of metabolite networks from four German population-based studies.
International journal of epidemiology.
2018
Academic Article
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Times cited: 9 -
Hepatic Steatosis Is Associated With Adverse Molecular Signatures in Subjects Without Diabetes.
The Journal of clinical endocrinology and metabolism.
2018
Academic Article
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Times cited: 12 -
Characterization of missing values in untargeted MS-based metabolomics data and evaluation of missing data handling strategies.
Metabolomics : Official journal of the Metabolomic Society.
2018
Academic Article
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Times cited: 131 -
The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice.
Nature communications.
2018
Academic Article
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Times cited: 197 -
Dilution correction for dynamically influenced urinary analyte data.
Analytica chimica acta.
2018
Academic Article
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Times cited: 6 -
Associations of maternal type 1 diabetes with childhood adiposity and metabolic health in the offspring: a prospective cohort study.
Diabetologia.
2018
Academic Article
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Times cited: 7 -
Comprehensive Metabolic Profiling Reveals a Lipid-Rich Fingerprint of Free Thyroxine Far Beyond Classic Parameters.
The Journal of clinical endocrinology and metabolism.
2018
Academic Article
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Times cited: 7 -
Genetic scores to stratify risk of developing multiple islet autoantibodies and type 1 diabetes: A prospective study in children.
PLoS medicine.
2018
Academic Article
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Times cited: 100 -
Eating less or more - Mindset induced changes in neural correlates of pre-meal planning.
Appetite.
2018
Academic Article
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Times cited: 16 -
Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.
Frontiers in immunology.
2018
Academic Article
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Times cited: 57 -
Metabolomic Profiling Reveals Cellular Reprogramming of B-Cell Lymphoma by a Lysine Deacetylase Inhibitor through the Choline Pathway.
EBioMedicine.
2018
Academic Article
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Times cited: 24 -
Allele-specific methylation of type 1 diabetes susceptibility genes.
Journal of autoimmunity.
2017
Academic Article
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Times cited: 13 -
Network inference from glycoproteomics data reveals new reactions in the IgG glycosylation pathway.
Nature communications.
2017
Academic Article
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Times cited: 45 -
Phenotype-driven identification of modules in a hierarchical map of multifluid metabolic correlations.
NPJ systems biology and applications.
2017
Academic Article
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Times cited: 17 -
Prediction of type 1 diabetes using a genetic risk model in the Diabetes Autoimmunity Study in the Young.
Pediatric diabetes.
2017
Academic Article
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Times cited: 18 -
N-acyl Taurines and Acylcarnitines Cause an Imbalance in Insulin Synthesis and Secretion Provoking β Cell Dysfunction in Type 2 Diabetes.
Cell metabolism.
2017
Academic Article
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Times cited: 38 -
Automated pathway and reaction prediction facilitates in silico identification of unknown metabolites in human cohort studies.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.
2017
Academic Article
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Times cited: 9 -
Exploring the molecular basis of age-related disease comorbidities using a multi-omics graphical model.
Scientific reports.
2016
Academic Article
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Times cited: 45 -
Peptide serum markers in islet autoantibody-positive children.
Diabetologia.
2016
Academic Article
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Times cited: 11 -
Metabolic Fingerprints of Circulating IGF-1 and the IGF-1/IGFBP-3 Ratio: A Multifluid Metabolomics Study.
The Journal of clinical endocrinology and metabolism.
2016
Academic Article
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Times cited: 15 -
Lactation is associated with altered metabolomic signatures in women with gestational diabetes.
Diabetologia.
2016
Academic Article
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Times cited: 14 -
Software tools for single-cell tracking and quantification of cellular and molecular properties.
Nature biotechnology.
2016
Article
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Times cited: 85 -
Computational approaches for systems metabolomics.
Current opinion in biotechnology.
2016
Information Resource
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Times cited: 34 - Metabolomics reveals effects of maternal smoking on endogenous metabolites from lipid metabolism in cord blood of newborns. Metabolomics : Official journal of the Metabolomic Society. 2016 Academic Article GET IT
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Unbiased Prediction and Feature Selection in High-Dimensional Survival Regression.
Journal of computational biology : a journal of computational molecular cell biology.
2016
Academic Article
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Times cited: 19 -
Alterations in Lipid and Inositol Metabolisms in Two Dopaminergic Disorders.
PloS one.
2016
Academic Article
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Times cited: 33 -
Metabolomics screening identifies reduced L-carnitine to be associated with progressive emphysema.
Clinical science (London, England : 1979).
2015
Academic Article
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Times cited: 21 -
A Metabolome-Wide Association Study of Kidney Function and Disease in the General Population.
Journal of the American Society of Nephrology : JASN.
2015
Academic Article
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Times cited: 169 - Gender-specific pathway differences in the human serum metabolome. Metabolomics : Official journal of the Metabolomic Society. 2015 Academic Article GET IT
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The Human Blood Metabolome-Transcriptome Interface.
PLoS genetics.
2015
Academic Article
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Times cited: 86 -
A systems view of type 2 diabetes-associated metabolic perturbations in saliva, blood and urine at different timescales of glycaemic control.
Diabetologia.
2015
Academic Article
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Times cited: 76 -
Multi-omic signature of body weight change: results from a population-based cohort study.
BMC medicine.
2015
Academic Article
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Times cited: 58 -
Network-based approach for analyzing intra- and interfluid metabolite associations in human blood, urine, and saliva.
Journal of proteome research.
2014
Academic Article
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Times cited: 29 -
Feature ranking of type 1 diabetes susceptibility genes improves prediction of type 1 diabetes.
Diabetologia.
2014
Academic Article
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Times cited: 70 -
Novel genetic associations with serum level metabolites identified by phenotype set enrichment analyses.
Human molecular genetics.
2014
Academic Article
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Times cited: 25 -
An atlas of genetic influences on human blood metabolites.
Nature genetics.
2014
Academic Article
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Times cited: 1017 -
Linking diet, physical activity, cardiorespiratory fitness and obesity to serum metabolite networks: findings from a population-based study.
International journal of obesity (2005).
2014
Academic Article
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Times cited: 81 -
A strategy to find gene combinations that identify children who progress rapidly to type 1 diabetes after islet autoantibody seroconversion.
Acta diabetologica.
2013
Academic Article
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Times cited: 17 -
Metabolite profiling reveals new insights into the regulation of serum urate in humans.
Metabolomics : Official journal of the Metabolomic Society.
2013
Academic Article
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Times cited: 53 -
A study of Caenorhabditis elegans DAF-2 mutants by metabolomics and differential correlation networks.
Molecular bioSystems.
2013
Academic Article
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Times cited: 35 -
Integrative genetic and metabolite profiling analysis suggests altered phosphatidylcholine metabolism in asthma.
Allergy.
2013
Academic Article
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Times cited: 58 -
Metabolomic profiles in individuals with negative affectivity and social inhibition: a population-based study of Type D personality.
Psychoneuroendocrinology.
2012
Academic Article
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Times cited: 22 -
Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.
PLoS genetics.
2012
Academic Article
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Times cited: 156 -
A strategy for combining minor genetic susceptibility genes to improve prediction of disease in type 1 diabetes.
Genes and immunity.
2012
Academic Article
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Times cited: 48 -
Identification and quantification of 1-hydroxybutene-2-yl mercapturic acid in human urine by UPLC- HILIC-MS/MS as a novel biomarker for 1,3-butadiene exposure.
Chemical research in toxicology.
2012
Academic Article
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Times cited: 13 -
Bayesian independent component analysis recovers pathway signatures from blood metabolomics data.
Journal of proteome research.
2012
Academic Article
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Times cited: 21 -
Body fat free mass is associated with the serum metabolite profile in a population-based study.
PloS one.
2012
Academic Article
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Times cited: 96 -
On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies.
BMC bioinformatics.
2012
Academic Article
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Times cited: 88 -
The dynamic range of the human metabolome revealed by challenges.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
2012
Academic Article
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Times cited: 218 -
Discovery of sexual dimorphisms in metabolic and genetic biomarkers.
PLoS genetics.
2011
Academic Article
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Times cited: 299 -
Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network.
PloS one.
2011
Academic Article
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Times cited: 126 -
Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data.
BMC systems biology.
2011
Academic Article
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Times cited: 237 -
Odefy--from discrete to continuous models.
BMC bioinformatics.
2010
Academic Article
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Times cited: 92 -
Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.
BMC genomics.
2010
Academic Article
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Times cited: 118 -
Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling.
BMC systems biology.
2009
Academic Article
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Times cited: 174 -
ProCope--protein complex prediction and evaluation.
Bioinformatics (Oxford, England).
2008
Academic Article
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Times cited: 30 -
SIMAP--structuring the network of protein similarities.
Nucleic acids research.
2007
Academic Article
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Times cited: 25 -
Gepard: a rapid and sensitive tool for creating dotplots on genome scale.
Bioinformatics (Oxford, England).
2007
Academic Article
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Times cited: 386