selected publications
- Selenocysteine tRNA methylation promotes oxidative stress resistance in melanoma metastasis. Nature cancer. 2024 Academic Article GET IT
- Dinoflagellate mRNA is pervasively modified with m1A. EMBO reports. 2024 Academic Article GET IT
- Engineering acyclovir-induced RNA nanodevices for reversible and tunable control of aptamer function. Cell chemical biology. 2024 Academic Article GET IT
- RNA tertiary structure and conformational dynamics revealed by BASH MaP. 2024 GET IT
- A circular split nanoluciferase reporter for validating and screening putative internal ribosomal entry site elements. RNA (New York, N.Y.). 2024 Academic Article GET IT
- Understanding the redundant functions of the m6A-binding YTHDF proteins. RNA (New York, N.Y.). 2024 Academic Article GET IT
- Fluorogenic CRISPR for genomic DNA imaging. Nature communications. 2024 Academic Article GET IT
- Gas6-Axl Signaling Induces SRF/MRTF-A Gene Transcription via MICAL2. Genes. 2023 Academic Article GET IT
- SCARPET: Site-specific quantification of methylated and non-methylated adenosines reveals m6A stoichiometry. RNA (New York, N.Y.). 2023 Academic Article GET IT
- Biomolecular condensates create phospholipid-enriched microenvironments. Nature chemical biology. 2023 Academic Article GET IT
- Highly efficient cellular expression of circular mRNA enables prolonged protein expression. Cell chemical biology. 2023 Academic Article GET IT
- m6A governs length-dependent enrichment of mRNAs in stress granules. Nature structural & molecular biology. 2023 Academic Article GET IT
- Publisher Correction: Reading, writing and erasing mRNA methylation. 2023 GET IT
- A systems-level mass spectrometry-based technique for accurate and sensitive quantification of the RNA cap epitranscriptome. Nature protocols. 2023 Review GET IT
- Alphaherpesvirus-mediated remodeling of the cellular transcriptome results in depletion of m6A-containing transcripts. iScience. 2023 Academic Article GET IT
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Intricate 3D architecture of a DNA mimic of GFP.
Nature.
2023
Academic Article
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Times cited: 12 -
Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture.
Nature communications.
2023
Academic Article
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Times cited: 6 - mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature. 2023 Academic Article GET IT
- BTG1 mutation yields supercompetitive B cells primed for malignant transformation. Science (New York, N.Y.). 2023 Academic Article GET IT
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Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells.
RNA biology.
2023
Academic Article
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Times cited: 4 - Cbln1 regulates axon growth and guidance in multiple neural regions. PLoS biology. 2022 Academic Article GET IT
- Small-Molecule Ebselen Binds to YTHDF Proteins Interfering with the Recognition of N 6-Methyladenosine-Modified RNAs. ACS pharmacology & translational science. 2022 Academic Article GET IT
- Alphaherpesvirus US3 protein-mediated inhibition of the m6A mRNA methyltransferase complex. Cell reports. 2022 Academic Article GET IT
- Alternative splicing of METTL3 explains apparently METTL3-independent m6A modifications in mRNA. PLoS biology. 2022 Academic Article GET IT
- Hidden codes in mRNA: Control of gene expression by m6A. Molecular cell. 2022 Review GET IT
- Caspase-11 interaction with NLRP3 potentiates the noncanonical activation of the NLRP3 inflammasome. Nature immunology. 2022 Academic Article GET IT
- N6-methyladenosine in poly(A) tails stabilize VSG transcripts. Nature. 2022 Academic Article GET IT
- Detection of SARS-CoV-2 RNA Using a DNA Aptamer Mimic of Green Fluorescent Protein. ACS chemical biology. 2022 Academic Article GET IT
- Self-Assembly of Intracellular Multivalent RNA Complexes Using Dimeric Corn and Beetroot Aptamers. Journal of the American Chemical Society. 2022 Academic Article GET IT
- YTHDC2 control of gametogenesis requires helicase activity but not m6A binding. Genes & development. 2022 Academic Article GET IT
- Repurposing an adenine riboswitch into a fluorogenic imaging and sensing tag. Nature chemical biology. 2021 Academic Article GET IT
- The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold. Nature chemical biology. 2021 Academic Article GET IT
- Engineering fluorophore recycling in a fluorogenic RNA aptamer. Angewandte Chemie (International ed. in English). 2021 Academic Article GET IT
- Transcriptional regulation of N6-methyladenosine orchestrates sex-dimorphic metabolic traits. Nature metabolism. 2021 Academic Article GET IT
- Mapping of m6A and Its Regulatory Targets in Prostate Cancer Reveals a METTL3-Low Induction of Therapy Resistance. Molecular cancer research : MCR. 2021 Academic Article GET IT
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N6-Methyladenosine on mRNA facilitates a phase-separated nuclear body that suppresses myeloid leukemic differentiation.
Cancer cell.
2021
Academic Article
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Times cited: 140 - Trans ligation of RNAs to generate hybrid circular RNAs using highly efficient autocatalytic transcripts. Methods (San Diego, Calif.). 2021 Academic Article GET IT
- Naturally occurring three-way junctions can be repurposed as genetically encoded RNA-based sensors. Cell chemical biology. 2021 Academic Article GET IT
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mTORC1 promotes cell growth via m6A-dependent mRNA degradation.
Molecular cell.
2021
Academic Article
GET IT
Times cited: 56 - Caspase-8 Inhibition Prevents the Cleavage and Degradation of E3 Ligase Substrate Receptor Cereblon and Potentiates Its Biological Function. Frontiers in cell and developmental biology. 2020 Academic Article GET IT
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The RNA m6A Reader YTHDF2 Maintains Oncogene Expression and Is a Targetable Dependency in Glioblastoma Stem Cells.
Cancer discovery.
2020
Academic Article
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Times cited: 252 -
m6A RNA methylation impacts fate choices during skin morphogenesis.
eLife.
2020
Academic Article
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Times cited: 29 -
Imaging mRNA trafficking in living cells using fluorogenic proteins.
Current opinion in chemical biology.
2020
Information Resource
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Times cited: 15 -
Imaging Intracellular S-Adenosyl Methionine Dynamics in Live Mammalian Cells with a Genetically Encoded Red Fluorescent RNA-Based Sensor.
Journal of the American Chemical Society.
2020
Academic Article
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Times cited: 48 -
A Unified Model for the Function of YTHDF Proteins in Regulating m6A-Modified mRNA.
Cell.
2020
Academic Article
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Times cited: 462 -
Limits in the detection of m6A changes using MeRIP/m6A-seq.
Scientific reports.
2020
Academic Article
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Times cited: 131 -
Fluorophore-Promoted RNA Folding and Photostability Enables Imaging of Single Broccoli-Tagged mRNAs in Live Mammalian Cells.
Angewandte Chemie (International ed. in English).
2020
Academic Article
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Times cited: 66 -
Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA.
Nucleic acids research.
2019
Academic Article
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Times cited: 114 -
Antibody cross-reactivity accounts for widespread appearance of m1A in 5'UTRs.
Nature communications.
2019
Academic Article
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Times cited: 78 -
A Fluorogenic RNA-Based Sensor Activated by Metabolite-Induced RNA Dimerization.
Cell chemical biology.
2019
Academic Article
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Times cited: 30 -
Reading, writing and erasing mRNA methylation.
Nature reviews. Molecular cell biology.
2019
Information Resource
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Times cited: 269 -
The human 18S rRNA m6A methyltransferase METTL5 is stabilized by TRMT112.
Nucleic acids research.
2019
Academic Article
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Times cited: 332 -
Live imaging of mRNA using RNA-stabilized fluorogenic proteins.
Nature methods.
2019
Academic Article
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Times cited: 71 -
m6A RNA Methylation Maintains Hematopoietic Stem Cell Identity and Symmetric Commitment.
Cell reports.
2019
Academic Article
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Times cited: 116 -
Synaptogenesis Stimulates a Proteasome-Mediated Ribosome Reduction in Axons.
Cell reports.
2019
Academic Article
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Times cited: 25 -
m6A enhances the phase separation potential of mRNA.
Nature.
2019
Academic Article
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Times cited: 467 -
Identification of the m6Am Methyltransferase PCIF1 Reveals the Location and Functions of m6Am in the Transcriptome.
Molecular cell.
2019
Academic Article
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Times cited: 176 -
Combining Chemical Synthesis and Enzymatic Methylation to Access Short RNAs with Various 5' Caps.
Chembiochem : a European journal of chemical biology.
2019
Academic Article
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Times cited: 9 -
Highly efficient expression of circular RNA aptamers in cells using autocatalytic transcripts.
Nature biotechnology.
2019
Academic Article
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Times cited: 188 -
Transcriptome-Wide Mapping of m6 A and m6 Am at Single-Nucleotide Resolution Using miCLIP.
Current protocols in molecular biology.
2019
Academic Article
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Times cited: 23 -
Spectral Tuning by a Single Nucleotide Controls the Fluorescence Properties of a Fluorogenic Aptamer.
Biochemistry.
2019
Academic Article
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Times cited: 9 -
FTO controls reversible m6Am RNA methylation during snRNA biogenesis.
Nature chemical biology.
2019
Academic Article
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Times cited: 200 -
Detection of Low-Abundance Metabolites in Live Cells Using an RNA Integrator.
Cell chemical biology.
2019
Academic Article
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Times cited: 33 -
Nonsense-mediated RNA decay in the brain: emerging modulator of neural development and disease.
Nature reviews. Neuroscience.
2018
Information Resource
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Times cited: 82 -
FTO, m6 Am , and the hypothesis of reversible epitranscriptomic mRNA modifications.
FEBS letters.
2018
Information Resource
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Times cited: 40 -
Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1.
Nature communications.
2018
Academic Article
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Times cited: 291 - A Staufen1-mediated decay pathway influences the local transcriptome in axons. Translation (Austin, Tex.). 2017 Academic Article GET IT
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Reading m6A in the Transcriptome: m6A-Binding Proteins.
Trends in cell biology.
2017
Information Resource
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Times cited: 422 -
Defining the location of promoter-associated R-loops at near-nucleotide resolution using bisDRIP-seq.
eLife.
2017
Academic Article
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Times cited: 92 -
RNA-Based Fluorescent Biosensors for Detecting Metabolites in vitro and in Living Cells.
Advances in pharmacology (San Diego, Calif.).
2017
Article
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Times cited: 16 -
A homodimer interface without base pairs in an RNA mimic of red fluorescent protein.
Nature chemical biology.
2017
Academic Article
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Times cited: 100 -
Imaging RNA polymerase III transcription using a photostable RNA-fluorophore complex.
Nature chemical biology.
2017
Academic Article
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Times cited: 194 -
The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells.
Nature medicine.
2017
Academic Article
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Times cited: 912 -
Rethinking m6A Readers, Writers, and Erasers.
Annual review of cell and developmental biology.
2017
Information Resource
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Times cited: 795 -
The m6A pathway facilitates sex determination in Drosophila.
Nature communications.
2017
Academic Article
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Times cited: 144 -
MetaPlotR: a Perl/R pipeline for plotting metagenes of nucleotide modifications and other transcriptomic sites.
Bioinformatics (Oxford, England).
2017
Academic Article
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Times cited: 84 -
Mapping m6A at Individual-Nucleotide Resolution Using Crosslinking and Immunoprecipitation (miCLIP).
Methods in molecular biology (Clifton, N.J.).
2017
Article
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Times cited: 31 -
Reversible methylation of m6Am in the 5' cap controls mRNA stability.
Nature.
2016
Academic Article
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Times cited: 811 -
m(6)A RNA methylation promotes XIST-mediated transcriptional repression.
Nature.
2016
Academic Article
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Times cited: 1271 -
Small Molecule Recognition and Tools to Study Modulation of r(CGG)(exp) in Fragile X-Associated Tremor Ataxia Syndrome.
ACS chemical biology.
2016
Academic Article
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Times cited: 39 -
Peptide Synthesis on a Next-Generation DNA Sequencing Platform.
Chembiochem : a European journal of chemical biology.
2016
Academic Article
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Times cited: 11 -
Photoacid Behaviour in a Fluorinated Green Fluorescent Protein Chromophore: Ultrafast Formation of Anion and Zwitterion States.†.
Chemical science.
2016
Academic Article
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Times cited: 24 -
RNA modifications: what have we learned and where are we headed?.
Nature reviews. Genetics.
2016
Information Resource
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Times cited: 118 -
Developing Fluorogenic Riboswitches for Imaging Metabolite Concentration Dynamics in Bacterial Cells.
Methods in enzymology.
2016
Article
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Times cited: 17 -
Separating neuronal compartments gives clues as to local effect of ubiquitin conjugates in synaptogenesis.
The Journal of cell biology.
2016
Article
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Times cited: 1 -
RNA Imaging with Dimeric Broccoli in Live Bacterial and Mammalian Cells.
Current protocols in chemical biology.
2016
Academic Article
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Times cited: 40 -
Fluorescent RNA Aptamers as a Tool to Study RNA-Modifying Enzymes.
Cell chemical biology.
2016
Academic Article
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Times cited: 60 -
Expanding the diversity of DNA base modifications with N⁶-methyldeoxyadenosine.
Genome biology.
2016
Academic Article
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Times cited: 10 - Preface. Methods in enzymology. 2016 Editorial Article GET IT
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5' UTR m(6)A Promotes Cap-Independent Translation.
Cell.
2015
Academic Article
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Times cited: 1375 -
Dynamic m(6)A mRNA methylation directs translational control of heat shock response.
Nature.
2015
Academic Article
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Times cited: 953 -
A novel effect of thalidomide and its analogs: suppression of cereblon ubiquitination enhances ubiquitin ligase function.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
2015
Academic Article
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Times cited: 43 -
Editorial overview: Molecular imaging: Cellular imaging approaches.
Current opinion in chemical biology.
2015
Editorial Article
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Times cited: 1 -
Metazoan tRNA introns generate stable circular RNAs in vivo.
RNA (New York, N.Y.).
2015
Academic Article
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Times cited: 163 -
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.
Nature methods.
2015
Academic Article
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Times cited: 1120 -
In-gel imaging of RNA processing using broccoli reveals optimal aptamer expression strategies.
Chemistry & biology.
2015
Academic Article
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Times cited: 123 -
Coupled local translation and degradation regulate growth cone collapse.
Nature communications.
2015
Academic Article
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Times cited: 47 -
Live-cell imaging of mammalian RNAs with Spinach2.
Methods in enzymology.
2015
Article
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Times cited: 20 -
Activation of SIRT3 by the NAD⁺ precursor nicotinamide riboside protects from noise-induced hearing loss.
Cell metabolism.
2014
Academic Article
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Times cited: 234 -
Broccoli: rapid selection of an RNA mimic of green fluorescent protein by fluorescence-based selection and directed evolution.
Journal of the American Chemical Society.
2014
Academic Article
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Times cited: 526 -
An expanding universe of mRNA modifications.
Nature structural & molecular biology.
2014
Article
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Times cited: 37 -
Structural basis for activity of highly efficient RNA mimics of green fluorescent protein.
Nature structural & molecular biology.
2014
Academic Article
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Times cited: 273 -
NAD+ and SIRT3 control microtubule dynamics and reduce susceptibility to antimicrotubule agents.
Proceedings of the National Academy of Sciences of the United States of America.
2014
Academic Article
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Times cited: 30 -
The dynamic epitranscriptome: N6-methyladenosine and gene expression control.
Nature reviews. Molecular cell biology.
2014
Information Resource
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Times cited: 787 -
Promoter-bound trinucleotide repeat mRNA drives epigenetic silencing in fragile X syndrome.
Science (New York, N.Y.).
2014
Academic Article
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Times cited: 236 -
Plug-and-play fluorophores extend the spectral properties of Spinach.
Journal of the American Chemical Society.
2014
Academic Article
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Times cited: 202 -
Redox modification of nuclear actin by MICAL-2 regulates SRF signaling.
Cell.
2014
Academic Article
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Times cited: 132 -
Profiling lysine ubiquitination by selective enrichment of ubiquitin remnant-containing peptides.
Methods in molecular biology (Clifton, N.J.).
2014
Academic Article
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Times cited: 7 -
Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria.
Nature protocols.
2013
Academic Article
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Times cited: 104 -
The DNA replication program is altered at the FMR1 locus in fragile X embryonic stem cells.
Molecular cell.
2013
Academic Article
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Times cited: 84 -
A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat-containing RNA.
Nature methods.
2013
Academic Article
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Times cited: 287 -
Global profiling of stimulus-induced polyadenylation in cells using a poly(A) trap.
Nature chemical biology.
2013
Academic Article
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Times cited: 49 -
A mental retardation-linked nonsense mutation in cereblon is rescued by proteasome inhibition.
The Journal of biological chemistry.
2013
Academic Article
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Times cited: 39 -
Imaging bacterial protein expression using genetically encoded RNA sensors.
Nature methods.
2013
Academic Article
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Times cited: 122 -
The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry.
Nature neuroscience.
2013
Academic Article
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Times cited: 270 -
New approaches for sensing metabolites and proteins in live cells using RNA.
Current opinion in chemical biology.
2013
Information Resource
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Times cited: 41 -
Regulation of axon guidance by compartmentalized nonsense-mediated mRNA decay.
Cell.
2013
Academic Article
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Times cited: 151 -
Comprehensive profiling of protein ubiquitination for drug discovery.
Current pharmaceutical design.
2013
Information Resource
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Times cited: 8 -
The birth of the Epitranscriptome: deciphering the function of RNA modifications.
Genome biology.
2012
Academic Article
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Times cited: 365 -
Intra-axonal translation of RhoA promotes axon growth inhibition by CSPG.
The Journal of neuroscience : the official journal of the Society for Neuroscience.
2012
Academic Article
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Times cited: 51 -
Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.
Cell.
2012
Academic Article
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Times cited: 3063 -
Intra-axonal translation of SMAD1/5/8 mediates retrograde regulation of trigeminal ganglia subtype specification.
Neuron.
2012
Academic Article
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Times cited: 70 -
Fluorescence imaging of cellular metabolites with RNA.
Science (New York, N.Y.).
2012
Article
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Times cited: 427 -
Chemical genetic-mediated spatial regulation of protein expression in neurons reveals an axonal function for wld(s).
Chemistry & biology.
2012
Academic Article
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Times cited: 16 -
Reprogramming axonal behavior by axon-specific viral transduction.
Gene therapy.
2012
Academic Article
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Times cited: 27 -
Cyclic amino acid linkers stabilizing key loops of brain derived neurotrophic factor.
Bioorganic & medicinal chemistry letters.
2011
Academic Article
GET IT
Times cited: 9 -
RNA mimics of green fluorescent protein.
Science (New York, N.Y.).
2011
Academic Article
GET IT
Times cited: 1017 -
Neurotrophin-mediated dendrite-to-nucleus signaling revealed by microfluidic compartmentalization of dendrites.
Proceedings of the National Academy of Sciences of the United States of America.
2011
Academic Article
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Times cited: 88 -
Assembling ligands in situ using bioorthogonal boronate ester synthesis.
Chemistry & biology.
2010
Academic Article
GET IT
Times cited: 32 -
N-CLAP: global profiling of N-termini by chemoselective labeling of the alpha-amine of proteins.
Cold Spring Harbor protocols.
2010
Academic Article
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Times cited: 6 -
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.
Nature biotechnology.
2010
Academic Article
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Times cited: 434 -
Global profiling of protease cleavage sites by chemoselective labeling of protein N-termini.
Proceedings of the National Academy of Sciences of the United States of America.
2009
Academic Article
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Times cited: 87 -
HDAC6 is a target for protection and regeneration following injury in the nervous system.
Proceedings of the National Academy of Sciences of the United States of America.
2009
Academic Article
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Times cited: 275 -
Axonal elongation triggered by stimulus-induced local translation of a polarity complex protein.
Nature cell biology.
2009
Academic Article
GET IT
Times cited: 152 -
Nitrosothiol reactivity profiling identifies S-nitrosylated proteins with unexpected stability.
Chemistry & biology.
2008
Academic Article
GET IT
Times cited: 157 -
Intra-axonal translation and retrograde trafficking of CREB promotes neuronal survival.
Nature cell biology.
2008
Academic Article
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Times cited: 238 -
Function and translational regulation of mRNA in developing axons.
Seminars in cell & developmental biology.
2007
Information Resource
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Times cited: 62 -
Pharmacologic manipulation of nitric oxide signaling: targeting NOS dimerization and protein-protein interactions.
Current topics in medicinal chemistry.
2007
Information Resource
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Times cited: 45 -
Soluble adenylyl cyclase is required for netrin-1 signaling in nerve growth cones.
Nature neuroscience.
2006
Academic Article
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Times cited: 91 -
Functional and selective RNA interference in developing axons and growth cones.
The Journal of neuroscience : the official journal of the Society for Neuroscience.
2006
Academic Article
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Times cited: 151 -
Local translation of RhoA regulates growth cone collapse.
Nature.
2005
Academic Article
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Times cited: 352 -
Ligand discovery using small molecule microarrays.
The Journal of pharmacology and experimental therapeutics.
2004
Information Resource
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Times cited: 31 -
Nitrosopeptide mapping: a novel methodology reveals s-nitrosylation of dexras1 on a single cysteine residue.
Chemistry & biology.
2002
Academic Article
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Times cited: 58 -
Neuronal nitric-oxide synthase localization mediated by a ternary complex with synapsin and CAPON.
Proceedings of the National Academy of Sciences of the United States of America.
2002
Academic Article
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Times cited: 106 -
The biotin switch method for the detection of S-nitrosylated proteins.
Science's STKE : signal transduction knowledge environment.
2001
Academic Article
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Times cited: 625 -
Protein S-nitrosylation: a physiological signal for neuronal nitric oxide.
Nature cell biology.
2001
Academic Article
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Times cited: 1181 -
Dexras1: a G protein specifically coupled to neuronal nitric oxide synthase via CAPON.
Neuron.
2000
Academic Article
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Times cited: 263 -
Insulin restores neuronal nitric oxide synthase expression and function that is lost in diabetic gastropathy.
The Journal of clinical investigation.
2000
Academic Article
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Times cited: 233 -
Structure of the PIN/LC8 dimer with a bound peptide.
Nature structural biology.
1999
Academic Article
GET IT
Times cited: 141 -
Haem oxygenase-1 prevents cell death by regulating cellular iron.
Nature cell biology.
1999
Academic Article
GET IT
Times cited: 458 -
CAPON: a protein associated with neuronal nitric oxide synthase that regulates its interactions with PSD95.
Neuron.
1998
Academic Article
GET IT
Times cited: 289 -
Targeted gene deletion of heme oxygenase 2 reveals neural role for carbon monoxide.
Proceedings of the National Academy of Sciences of the United States of America.
1997
Academic Article
GET IT
Times cited: 219 -
PIN: an associated protein inhibitor of neuronal nitric oxide synthase.
Science (New York, N.Y.).
1996
Academic Article
GET IT
Times cited: 409 -
Nitric oxide: a neural messenger.
Annual review of cell and developmental biology.
1995
Information Resource
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Times cited: 294 -
The iron-responsive element binding protein: a target for synaptic actions of nitric oxide.
Proceedings of the National Academy of Sciences of the United States of America.
1994
Academic Article
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Times cited: 72 -
The interaction between the iron-responsive element binding protein and its cognate RNA is highly dependent upon both RNA sequence and structure.
Nucleic acids research.
1993
Academic Article
GET IT
Times cited: 97