selected publications
- Live-Cell Imaging of mRNA Using a Pepper RNA Tag. Methods in molecular biology (Clifton, N.J.). 2025 Academic Article GET IT
- Selenocysteine tRNA methylation promotes oxidative stress resistance in melanoma metastasis. Nature cancer. 2024 Academic Article GET IT
- Dinoflagellate mRNA is pervasively modified with m1A. EMBO reports. 2024 Academic Article GET IT
- Engineering acyclovir-induced RNA nanodevices for reversible and tunable control of aptamer function. Cell chemical biology. 2024 Academic Article GET IT
- RNA tertiary structure and conformational dynamics revealed by BASH MaP. 2024 GET IT
- A circular split nanoluciferase reporter for validating and screening putative internal ribosomal entry site elements. RNA (New York, N.Y.). 2024 Academic Article GET IT
- Understanding the redundant functions of the m6A-binding YTHDF proteins. RNA (New York, N.Y.). 2024 Academic Article GET IT
- Fluorogenic CRISPR for genomic DNA imaging. Nature communications. 2024 Academic Article GET IT
- Gas6-Axl Signaling Induces SRF/MRTF-A Gene Transcription via MICAL2. Genes. 2023 Academic Article GET IT
- SCARPET: Site-specific quantification of methylated and non-methylated adenosines reveals m6A stoichiometry. RNA (New York, N.Y.). 2023 Academic Article GET IT
- Biomolecular condensates create phospholipid-enriched microenvironments. Nature chemical biology. 2023 Academic Article GET IT
- Highly efficient cellular expression of circular mRNA enables prolonged protein expression. Cell chemical biology. 2023 Academic Article GET IT
- m6A governs length-dependent enrichment of mRNAs in stress granules. Nature structural & molecular biology. 2023 Academic Article GET IT
- Publisher Correction: Reading, writing and erasing mRNA methylation. 2023 GET IT
- A systems-level mass spectrometry-based technique for accurate and sensitive quantification of the RNA cap epitranscriptome. Nature protocols. 2023 Review GET IT
- Alphaherpesvirus-mediated remodeling of the cellular transcriptome results in depletion of m6A-containing transcripts. iScience. 2023 Academic Article GET IT
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Intricate 3D architecture of a DNA mimic of GFP.
Nature.
2023
Academic Article
GET IT
Times cited: 12 -
Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture.
Nature communications.
2023
Academic Article
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Times cited: 7 - mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature. 2023 Academic Article GET IT
- BTG1 mutation yields supercompetitive B cells primed for malignant transformation. Science (New York, N.Y.). 2023 Academic Article GET IT
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Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells.
RNA biology.
2023
Academic Article
GET IT
Times cited: 4 - Cbln1 regulates axon growth and guidance in multiple neural regions. PLoS biology. 2022 Academic Article GET IT
- Small-Molecule Ebselen Binds to YTHDF Proteins Interfering with the Recognition of N 6-Methyladenosine-Modified RNAs. ACS pharmacology & translational science. 2022 Academic Article GET IT
- Alphaherpesvirus US3 protein-mediated inhibition of the m6A mRNA methyltransferase complex. Cell reports. 2022 Academic Article GET IT
- Alternative splicing of METTL3 explains apparently METTL3-independent m6A modifications in mRNA. PLoS biology. 2022 Academic Article GET IT
- Hidden codes in mRNA: Control of gene expression by m6A. Molecular cell. 2022 Review GET IT
- Caspase-11 interaction with NLRP3 potentiates the noncanonical activation of the NLRP3 inflammasome. Nature immunology. 2022 Academic Article GET IT
- N6-methyladenosine in poly(A) tails stabilize VSG transcripts. Nature. 2022 Academic Article GET IT
- Detection of SARS-CoV-2 RNA Using a DNA Aptamer Mimic of Green Fluorescent Protein. ACS chemical biology. 2022 Academic Article GET IT
- Self-Assembly of Intracellular Multivalent RNA Complexes Using Dimeric Corn and Beetroot Aptamers. Journal of the American Chemical Society. 2022 Academic Article GET IT
- YTHDC2 control of gametogenesis requires helicase activity but not m6A binding. Genes & development. 2022 Academic Article GET IT
- Repurposing an adenine riboswitch into a fluorogenic imaging and sensing tag. Nature chemical biology. 2021 Academic Article GET IT
- The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold. Nature chemical biology. 2021 Academic Article GET IT
- Engineering fluorophore recycling in a fluorogenic RNA aptamer. Angewandte Chemie (International ed. in English). 2021 Academic Article GET IT
- Transcriptional regulation of N6-methyladenosine orchestrates sex-dimorphic metabolic traits. Nature metabolism. 2021 Academic Article GET IT
- Mapping of m6A and Its Regulatory Targets in Prostate Cancer Reveals a METTL3-Low Induction of Therapy Resistance. Molecular cancer research : MCR. 2021 Academic Article GET IT
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N6-Methyladenosine on mRNA facilitates a phase-separated nuclear body that suppresses myeloid leukemic differentiation.
Cancer cell.
2021
Academic Article
GET IT
Times cited: 145 - Trans ligation of RNAs to generate hybrid circular RNAs using highly efficient autocatalytic transcripts. Methods (San Diego, Calif.). 2021 Academic Article GET IT
- Naturally occurring three-way junctions can be repurposed as genetically encoded RNA-based sensors. Cell chemical biology. 2021 Academic Article GET IT
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mTORC1 promotes cell growth via m6A-dependent mRNA degradation.
Molecular cell.
2021
Academic Article
GET IT
Times cited: 55 - Caspase-8 Inhibition Prevents the Cleavage and Degradation of E3 Ligase Substrate Receptor Cereblon and Potentiates Its Biological Function. Frontiers in cell and developmental biology. 2020 Academic Article GET IT
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The RNA m6A Reader YTHDF2 Maintains Oncogene Expression and Is a Targetable Dependency in Glioblastoma Stem Cells.
Cancer discovery.
2020
Academic Article
GET IT
Times cited: 257 -
m6A RNA methylation impacts fate choices during skin morphogenesis.
eLife.
2020
Academic Article
GET IT
Times cited: 30 -
Imaging mRNA trafficking in living cells using fluorogenic proteins.
Current opinion in chemical biology.
2020
Information Resource
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Times cited: 15 -
Imaging Intracellular S-Adenosyl Methionine Dynamics in Live Mammalian Cells with a Genetically Encoded Red Fluorescent RNA-Based Sensor.
Journal of the American Chemical Society.
2020
Academic Article
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Times cited: 48 -
A Unified Model for the Function of YTHDF Proteins in Regulating m6A-Modified mRNA.
Cell.
2020
Academic Article
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Times cited: 468 -
Limits in the detection of m6A changes using MeRIP/m6A-seq.
Scientific reports.
2020
Academic Article
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Times cited: 131 -
Fluorophore-Promoted RNA Folding and Photostability Enables Imaging of Single Broccoli-Tagged mRNAs in Live Mammalian Cells.
Angewandte Chemie (International ed. in English).
2020
Academic Article
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Times cited: 69 -
Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA.
Nucleic acids research.
2019
Academic Article
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Times cited: 120 -
Antibody cross-reactivity accounts for widespread appearance of m1A in 5'UTRs.
Nature communications.
2019
Academic Article
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Times cited: 79 -
A Fluorogenic RNA-Based Sensor Activated by Metabolite-Induced RNA Dimerization.
Cell chemical biology.
2019
Academic Article
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Times cited: 30 -
Reading, writing and erasing mRNA methylation.
Nature reviews. Molecular cell biology.
2019
Information Resource
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Times cited: 269 -
The human 18S rRNA m6A methyltransferase METTL5 is stabilized by TRMT112.
Nucleic acids research.
2019
Academic Article
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Times cited: 339 -
Live imaging of mRNA using RNA-stabilized fluorogenic proteins.
Nature methods.
2019
Academic Article
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Times cited: 72 -
m6A RNA Methylation Maintains Hematopoietic Stem Cell Identity and Symmetric Commitment.
Cell reports.
2019
Academic Article
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Times cited: 118 -
Synaptogenesis Stimulates a Proteasome-Mediated Ribosome Reduction in Axons.
Cell reports.
2019
Academic Article
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Times cited: 25 -
m6A enhances the phase separation potential of mRNA.
Nature.
2019
Academic Article
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Times cited: 479 -
Identification of the m6Am Methyltransferase PCIF1 Reveals the Location and Functions of m6Am in the Transcriptome.
Molecular cell.
2019
Academic Article
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Times cited: 180 -
Combining Chemical Synthesis and Enzymatic Methylation to Access Short RNAs with Various 5' Caps.
Chembiochem : a European journal of chemical biology.
2019
Academic Article
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Times cited: 9 -
Highly efficient expression of circular RNA aptamers in cells using autocatalytic transcripts.
Nature biotechnology.
2019
Academic Article
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Times cited: 194 -
Transcriptome-Wide Mapping of m6 A and m6 Am at Single-Nucleotide Resolution Using miCLIP.
Current protocols in molecular biology.
2019
Academic Article
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Times cited: 23 -
Spectral Tuning by a Single Nucleotide Controls the Fluorescence Properties of a Fluorogenic Aptamer.
Biochemistry.
2019
Academic Article
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Times cited: 9 -
FTO controls reversible m6Am RNA methylation during snRNA biogenesis.
Nature chemical biology.
2019
Academic Article
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Times cited: 202 -
Detection of Low-Abundance Metabolites in Live Cells Using an RNA Integrator.
Cell chemical biology.
2019
Academic Article
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Times cited: 33 -
Nonsense-mediated RNA decay in the brain: emerging modulator of neural development and disease.
Nature reviews. Neuroscience.
2018
Information Resource
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Times cited: 83 -
FTO, m6 Am , and the hypothesis of reversible epitranscriptomic mRNA modifications.
FEBS letters.
2018
Information Resource
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Times cited: 40 -
Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1.
Nature communications.
2018
Academic Article
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Times cited: 295 - A Staufen1-mediated decay pathway influences the local transcriptome in axons. Translation (Austin, Tex.). 2017 Academic Article GET IT
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Reading m6A in the Transcriptome: m6A-Binding Proteins.
Trends in cell biology.
2017
Information Resource
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Times cited: 425 -
Defining the location of promoter-associated R-loops at near-nucleotide resolution using bisDRIP-seq.
eLife.
2017
Academic Article
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Times cited: 93 -
RNA-Based Fluorescent Biosensors for Detecting Metabolites in vitro and in Living Cells.
Advances in pharmacology (San Diego, Calif.).
2017
Article
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Times cited: 16 -
A homodimer interface without base pairs in an RNA mimic of red fluorescent protein.
Nature chemical biology.
2017
Academic Article
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Times cited: 101 -
Imaging RNA polymerase III transcription using a photostable RNA-fluorophore complex.
Nature chemical biology.
2017
Academic Article
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Times cited: 195 -
The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells.
Nature medicine.
2017
Academic Article
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Times cited: 921 -
Rethinking m6A Readers, Writers, and Erasers.
Annual review of cell and developmental biology.
2017
Information Resource
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Times cited: 805 -
The m6A pathway facilitates sex determination in Drosophila.
Nature communications.
2017
Academic Article
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Times cited: 143 -
MetaPlotR: a Perl/R pipeline for plotting metagenes of nucleotide modifications and other transcriptomic sites.
Bioinformatics (Oxford, England).
2017
Academic Article
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Times cited: 85 -
Mapping m6A at Individual-Nucleotide Resolution Using Crosslinking and Immunoprecipitation (miCLIP).
Methods in molecular biology (Clifton, N.J.).
2017
Article
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Times cited: 31 -
Reversible methylation of m6Am in the 5' cap controls mRNA stability.
Nature.
2016
Academic Article
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Times cited: 815 -
m(6)A RNA methylation promotes XIST-mediated transcriptional repression.
Nature.
2016
Academic Article
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Times cited: 1282 -
Small Molecule Recognition and Tools to Study Modulation of r(CGG)(exp) in Fragile X-Associated Tremor Ataxia Syndrome.
ACS chemical biology.
2016
Academic Article
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Times cited: 40 -
Peptide Synthesis on a Next-Generation DNA Sequencing Platform.
Chembiochem : a European journal of chemical biology.
2016
Academic Article
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Times cited: 11 -
Photoacid Behaviour in a Fluorinated Green Fluorescent Protein Chromophore: Ultrafast Formation of Anion and Zwitterion States.†.
Chemical science.
2016
Academic Article
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Times cited: 24 -
RNA modifications: what have we learned and where are we headed?.
Nature reviews. Genetics.
2016
Information Resource
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Times cited: 118 -
Developing Fluorogenic Riboswitches for Imaging Metabolite Concentration Dynamics in Bacterial Cells.
Methods in enzymology.
2016
Article
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Times cited: 17 -
Separating neuronal compartments gives clues as to local effect of ubiquitin conjugates in synaptogenesis.
The Journal of cell biology.
2016
Article
GET IT
Times cited: 1 -
RNA Imaging with Dimeric Broccoli in Live Bacterial and Mammalian Cells.
Current protocols in chemical biology.
2016
Academic Article
GET IT
Times cited: 40 -
Fluorescent RNA Aptamers as a Tool to Study RNA-Modifying Enzymes.
Cell chemical biology.
2016
Academic Article
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Times cited: 61 -
Expanding the diversity of DNA base modifications with N⁶-methyldeoxyadenosine.
Genome biology.
2016
Academic Article
GET IT
Times cited: 10 - Preface. Methods in enzymology. 2016 Editorial Article GET IT
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5' UTR m(6)A Promotes Cap-Independent Translation.
Cell.
2015
Academic Article
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Times cited: 1388 -
Dynamic m(6)A mRNA methylation directs translational control of heat shock response.
Nature.
2015
Academic Article
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Times cited: 965 -
A novel effect of thalidomide and its analogs: suppression of cereblon ubiquitination enhances ubiquitin ligase function.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
2015
Academic Article
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Times cited: 44 -
Editorial overview: Molecular imaging: Cellular imaging approaches.
Current opinion in chemical biology.
2015
Editorial Article
GET IT
Times cited: 1 -
Metazoan tRNA introns generate stable circular RNAs in vivo.
RNA (New York, N.Y.).
2015
Academic Article
GET IT
Times cited: 164 -
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.
Nature methods.
2015
Academic Article
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Times cited: 1128 -
In-gel imaging of RNA processing using broccoli reveals optimal aptamer expression strategies.
Chemistry & biology.
2015
Academic Article
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Times cited: 127 -
Coupled local translation and degradation regulate growth cone collapse.
Nature communications.
2015
Academic Article
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Times cited: 47 -
Live-cell imaging of mammalian RNAs with Spinach2.
Methods in enzymology.
2015
Article
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Times cited: 20 -
Activation of SIRT3 by the NAD⁺ precursor nicotinamide riboside protects from noise-induced hearing loss.
Cell metabolism.
2014
Academic Article
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Times cited: 233 -
Broccoli: rapid selection of an RNA mimic of green fluorescent protein by fluorescence-based selection and directed evolution.
Journal of the American Chemical Society.
2014
Academic Article
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Times cited: 532 -
An expanding universe of mRNA modifications.
Nature structural & molecular biology.
2014
Article
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Times cited: 37 -
Structural basis for activity of highly efficient RNA mimics of green fluorescent protein.
Nature structural & molecular biology.
2014
Academic Article
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Times cited: 275 -
NAD+ and SIRT3 control microtubule dynamics and reduce susceptibility to antimicrotubule agents.
Proceedings of the National Academy of Sciences of the United States of America.
2014
Academic Article
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Times cited: 30 -
The dynamic epitranscriptome: N6-methyladenosine and gene expression control.
Nature reviews. Molecular cell biology.
2014
Information Resource
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Times cited: 790 -
Promoter-bound trinucleotide repeat mRNA drives epigenetic silencing in fragile X syndrome.
Science (New York, N.Y.).
2014
Academic Article
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Times cited: 238 -
Plug-and-play fluorophores extend the spectral properties of Spinach.
Journal of the American Chemical Society.
2014
Academic Article
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Times cited: 204 -
Redox modification of nuclear actin by MICAL-2 regulates SRF signaling.
Cell.
2014
Academic Article
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Times cited: 133 -
Profiling lysine ubiquitination by selective enrichment of ubiquitin remnant-containing peptides.
Methods in molecular biology (Clifton, N.J.).
2014
Academic Article
GET IT
Times cited: 7 -
Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria.
Nature protocols.
2013
Academic Article
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Times cited: 104 -
The DNA replication program is altered at the FMR1 locus in fragile X embryonic stem cells.
Molecular cell.
2013
Academic Article
GET IT
Times cited: 84 -
A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat-containing RNA.
Nature methods.
2013
Academic Article
GET IT
Times cited: 290 -
Global profiling of stimulus-induced polyadenylation in cells using a poly(A) trap.
Nature chemical biology.
2013
Academic Article
GET IT
Times cited: 49 -
A mental retardation-linked nonsense mutation in cereblon is rescued by proteasome inhibition.
The Journal of biological chemistry.
2013
Academic Article
GET IT
Times cited: 40 -
Imaging bacterial protein expression using genetically encoded RNA sensors.
Nature methods.
2013
Academic Article
GET IT
Times cited: 122 -
The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry.
Nature neuroscience.
2013
Academic Article
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Times cited: 270 -
New approaches for sensing metabolites and proteins in live cells using RNA.
Current opinion in chemical biology.
2013
Information Resource
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Times cited: 41 -
Regulation of axon guidance by compartmentalized nonsense-mediated mRNA decay.
Cell.
2013
Academic Article
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Times cited: 151 -
Comprehensive profiling of protein ubiquitination for drug discovery.
Current pharmaceutical design.
2013
Information Resource
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Times cited: 8 -
The birth of the Epitranscriptome: deciphering the function of RNA modifications.
Genome biology.
2012
Academic Article
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Times cited: 368 -
Intra-axonal translation of RhoA promotes axon growth inhibition by CSPG.
The Journal of neuroscience : the official journal of the Society for Neuroscience.
2012
Academic Article
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Times cited: 51 -
Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.
Cell.
2012
Academic Article
GET IT
Times cited: 3083 -
Intra-axonal translation of SMAD1/5/8 mediates retrograde regulation of trigeminal ganglia subtype specification.
Neuron.
2012
Academic Article
GET IT
Times cited: 70 -
Fluorescence imaging of cellular metabolites with RNA.
Science (New York, N.Y.).
2012
Article
GET IT
Times cited: 429 -
Chemical genetic-mediated spatial regulation of protein expression in neurons reveals an axonal function for wld(s).
Chemistry & biology.
2012
Academic Article
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Times cited: 16 -
Reprogramming axonal behavior by axon-specific viral transduction.
Gene therapy.
2012
Academic Article
GET IT
Times cited: 27 -
Cyclic amino acid linkers stabilizing key loops of brain derived neurotrophic factor.
Bioorganic & medicinal chemistry letters.
2011
Academic Article
GET IT
Times cited: 9 -
RNA mimics of green fluorescent protein.
Science (New York, N.Y.).
2011
Academic Article
GET IT
Times cited: 1025 -
Neurotrophin-mediated dendrite-to-nucleus signaling revealed by microfluidic compartmentalization of dendrites.
Proceedings of the National Academy of Sciences of the United States of America.
2011
Academic Article
GET IT
Times cited: 86 -
Assembling ligands in situ using bioorthogonal boronate ester synthesis.
Chemistry & biology.
2010
Academic Article
GET IT
Times cited: 34 -
N-CLAP: global profiling of N-termini by chemoselective labeling of the alpha-amine of proteins.
Cold Spring Harbor protocols.
2010
Academic Article
GET IT
Times cited: 6 -
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.
Nature biotechnology.
2010
Academic Article
GET IT
Times cited: 435 -
Global profiling of protease cleavage sites by chemoselective labeling of protein N-termini.
Proceedings of the National Academy of Sciences of the United States of America.
2009
Academic Article
GET IT
Times cited: 87 -
HDAC6 is a target for protection and regeneration following injury in the nervous system.
Proceedings of the National Academy of Sciences of the United States of America.
2009
Academic Article
GET IT
Times cited: 276 -
Axonal elongation triggered by stimulus-induced local translation of a polarity complex protein.
Nature cell biology.
2009
Academic Article
GET IT
Times cited: 152 -
Nitrosothiol reactivity profiling identifies S-nitrosylated proteins with unexpected stability.
Chemistry & biology.
2008
Academic Article
GET IT
Times cited: 157 -
Intra-axonal translation and retrograde trafficking of CREB promotes neuronal survival.
Nature cell biology.
2008
Academic Article
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Times cited: 238 -
Function and translational regulation of mRNA in developing axons.
Seminars in cell & developmental biology.
2007
Information Resource
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Times cited: 62 -
Pharmacologic manipulation of nitric oxide signaling: targeting NOS dimerization and protein-protein interactions.
Current topics in medicinal chemistry.
2007
Information Resource
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Times cited: 45 -
Soluble adenylyl cyclase is required for netrin-1 signaling in nerve growth cones.
Nature neuroscience.
2006
Academic Article
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Times cited: 91 -
Functional and selective RNA interference in developing axons and growth cones.
The Journal of neuroscience : the official journal of the Society for Neuroscience.
2006
Academic Article
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Times cited: 152 -
Local translation of RhoA regulates growth cone collapse.
Nature.
2005
Academic Article
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Times cited: 352 -
Ligand discovery using small molecule microarrays.
The Journal of pharmacology and experimental therapeutics.
2004
Information Resource
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Times cited: 31 -
Nitrosopeptide mapping: a novel methodology reveals s-nitrosylation of dexras1 on a single cysteine residue.
Chemistry & biology.
2002
Academic Article
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Times cited: 58 -
Neuronal nitric-oxide synthase localization mediated by a ternary complex with synapsin and CAPON.
Proceedings of the National Academy of Sciences of the United States of America.
2002
Academic Article
GET IT
Times cited: 106 -
The biotin switch method for the detection of S-nitrosylated proteins.
Science's STKE : signal transduction knowledge environment.
2001
Academic Article
GET IT
Times cited: 625 -
Protein S-nitrosylation: a physiological signal for neuronal nitric oxide.
Nature cell biology.
2001
Academic Article
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Times cited: 1181 -
Dexras1: a G protein specifically coupled to neuronal nitric oxide synthase via CAPON.
Neuron.
2000
Academic Article
GET IT
Times cited: 263 -
Insulin restores neuronal nitric oxide synthase expression and function that is lost in diabetic gastropathy.
The Journal of clinical investigation.
2000
Academic Article
GET IT
Times cited: 233 -
Structure of the PIN/LC8 dimer with a bound peptide.
Nature structural biology.
1999
Academic Article
GET IT
Times cited: 141 -
Haem oxygenase-1 prevents cell death by regulating cellular iron.
Nature cell biology.
1999
Academic Article
GET IT
Times cited: 458 -
CAPON: a protein associated with neuronal nitric oxide synthase that regulates its interactions with PSD95.
Neuron.
1998
Academic Article
GET IT
Times cited: 289 -
Targeted gene deletion of heme oxygenase 2 reveals neural role for carbon monoxide.
Proceedings of the National Academy of Sciences of the United States of America.
1997
Academic Article
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Times cited: 219 -
PIN: an associated protein inhibitor of neuronal nitric oxide synthase.
Science (New York, N.Y.).
1996
Academic Article
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Times cited: 409 -
Nitric oxide: a neural messenger.
Annual review of cell and developmental biology.
1995
Information Resource
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Times cited: 294 -
The iron-responsive element binding protein: a target for synaptic actions of nitric oxide.
Proceedings of the National Academy of Sciences of the United States of America.
1994
Academic Article
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Times cited: 72 -
The interaction between the iron-responsive element binding protein and its cognate RNA is highly dependent upon both RNA sequence and structure.
Nucleic acids research.
1993
Academic Article
GET IT
Times cited: 97