selected publications
- Correction: Social connectedness as a determinant of mental health: A scoping review. 2024 GET IT
- Extracting social support and social isolation information from clinical psychiatry notes: comparing a rule-based natural language processing system and a large language model. Journal of the American Medical Informatics Association : JAMIA. 2024 Academic Article GET IT
- A Cross-sectional Study of Patient Perspectives on Artificial Intelligence: A Comparison of Somatic Versus Mental Health Care. Journal of general internal medicine. 2024 Letter GET IT
- Deep learning for identifying personal and family history of suicidal thoughts and behaviors from EHRs. NPJ digital medicine. 2024 Academic Article GET IT
- Patient Perspectives on AI for Mental Health Care: Cross-Sectional Survey Study. JMIR mental health. 2024 Academic Article GET IT
- Clinical associations with treatment resistance in depression: An electronic health record study. Psychiatry research. 2024 Academic Article GET IT
- Analyzing Social Factors to Enhance Suicide Prevention Across Population Groups. Proceedings. IEEE International Conference on Healthcare Informatics. 2024 Academic Article GET IT
- Identification and expression dynamics of CYPome across different developmental stages of Maconellicoccus hirsutus (Green). Comparative biochemistry and physiology. Part D, Genomics & proteomics. 2024 Academic Article GET IT
- Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias. Journal of biomedical informatics. 2024 Academic Article GET IT
- Preparing for the bedside-optimizing a postpartum depression risk prediction model for clinical implementation in a health system. Journal of the American Medical Informatics Association : JAMIA. 2024 Academic Article GET IT
- Decoding Suicide Decedent Profiles and Signs of Suicidal Intent Using Latent Class Analysis. JAMA psychiatry. 2024 Academic Article GET IT
- Detection of Personal and Family History of Suicidal Thoughts and Behaviors using Deep Learning and Natural Language Processing: A Multi-Site Study. 2024 GET IT
- Comparative Merits of Available Mortality Data Sources for Clinical Research. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2024 Academic Article GET IT
- Automated classification of lay health articles using natural language processing: a case study on pregnancy health and postpartum depression. Frontiers in psychiatry. 2023 Academic Article GET IT
- Visualizing machine learning-based predictions of postpartum depression risk for lay audiences. Journal of the American Medical Informatics Association : JAMIA. 2023 Academic Article GET IT
- Patterns of Social Determinants of Health and Child Mental Health, Cognition, and Physical Health. JAMA pediatrics. 2023 Academic Article GET IT
- Evolving availability and standardization of patient attributes for matching. Health affairs scholar. 2023 Academic Article GET IT
- Association of opioid or other substance use disorders with health care use among patients with suicidal symptoms. Journal of substance use and addiction treatment. 2023 Academic Article GET IT
- Trends in Healthcare Service Disruptions and Associations with COVID-19 Outcomes among Patients with SMI vs. Non-SMI during COVID-19. 2023 GET IT
- Longitudinal Trajectories of Symptom Change During Antidepressant Treatment Among Managed Care Patients with Co-Occurring Depression and Anxiety. 2023 GET IT
- Effects of Geography on Risk for Future Suicidal Ideation and Attempts Among Children and Youth. JAACAP open. 2023 Academic Article GET IT
- Characterizing atrial fibrillation symptom improvement following de novo catheter ablation. European journal of cardiovascular nursing. 2023 Academic Article GET IT
- AD-BERT: Using Pre-trained Language Model to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease. Journal of biomedical informatics. 2023 Academic Article GET IT
- Women's perspectives on the use of artificial intelligence (AI)-based technologies in mental healthcare. JAMIA open. 2023 Academic Article GET IT
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Risk stratification models for predicting preventable hospitalization in commercially insured late middle-aged adults with depression.
BMC health services research.
2023
Academic Article
GET IT
Times cited: 213 -
Comparing the effects of four common drug classes on the progression of mild cognitive impairment to dementia using electronic health records.
Scientific reports.
2023
Academic Article
GET IT
Times cited: 4 - Multi-ancestry genome- and phenome-wide association studies of diverticular disease in electronic health records with natural language processing enriched phenotyping algorithm. PloS one. 2023 Academic Article GET IT
- A multisite comparison using electronic health records and natural language processing to identify the association between suicidality and hospital readmission amongst patients with eating disorders. The International journal of eating disorders. 2023 Academic Article GET IT
- An NLP approach to identify SDoH-related circumstance and suicide crisis from death investigation narratives. Journal of the American Medical Informatics Association : JAMIA. 2023 Academic Article GET IT
- Using Machine Learning to Predict Antidepressant Treatment Outcome From Electronic Health Records. Psychiatric research and clinical practice. 2023 Academic Article GET IT
- Effects of social deprivation on risk factors for suicidal ideation and suicide attempts in commercially insured US youth and adults. Scientific reports. 2023 Academic Article GET IT
- Prediction of left ventricular ejection fraction changes in heart failure patients using machine learning and electronic health records: a multi-site study. Scientific reports. 2023 Academic Article GET IT
- Comorbidity and healthcare utilization in patients with treatment resistant depression: A large-scale retrospective cohort analysis using electronic health records. Journal of affective disorders. 2022 Academic Article GET IT
- Characterizing variability of electronic health record-driven phenotype definitions. Journal of the American Medical Informatics Association : JAMIA. 2022 Academic Article GET IT
- Trends in psychiatric diagnoses by COVID-19 infection and hospitalization among patients with and without recent clinical psychiatric diagnoses in New York city from March 2020 to August 2021. Translational psychiatry. 2022 Academic Article GET IT
- Risk of suicide attempts and self-harm after 1.4 million general medical hospitalizations of men with mental illness. Journal of psychiatric research. 2022 Academic Article GET IT
- Portability of natural language processing methods to detect suicidality from clinical text in US and UK electronic health records. Journal of affective disorders reports. 2022 Academic Article GET IT
- Social connectedness as a determinant of mental health: A scoping review. PloS one. 2022 Review GET IT
- Predictive Modeling for Suicide-Related Outcomes and Risk Factors among Patients with Pain Conditions: A Systematic Review. Journal of clinical medicine. 2022 Review GET IT
- Faces Scales for Anxiety and Anger: A National Study of Measurement Properties. The Journal of clinical psychiatry. 2022 Academic Article GET IT
- Electronic health records and blockchain interoperability requirements: a scoping review. JAMIA open. 2022 Review GET IT
- Design and validation of a FHIR-based EHR-driven phenotyping toolbox. Journal of the American Medical Informatics Association : JAMIA. 2022 Academic Article GET IT
- Use of Acute Mental Health Care in U.S. Children's Hospitals Before and After Statewide COVID-19 School Closure Orders. Psychiatric services (Washington, D.C.). 2022 Academic Article GET IT
- Association of Social Determinants of Health and Vaccinations With Child Mental Health During the COVID-19 Pandemic in the US. JAMA psychiatry. 2022 Academic Article GET IT
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An architecture for research computing in health to support clinical and translational investigators with electronic patient data.
Journal of the American Medical Informatics Association : JAMIA.
2022
Academic Article
GET IT
Times cited: 9 - Mental Health-Related Emergency Department Visits Among Children During The Early COVID-19 Pandemic. Psychiatric research and clinical practice. 2022 Academic Article GET IT
- A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2022 Academic Article GET IT
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Deep significance clustering: a novel approach for identifying risk-stratified and predictive patient subgroups.
Journal of the American Medical Informatics Association : JAMIA.
2021
Academic Article
GET IT
Times cited: 10 - The importance of social activity to risk of major depression in older adults. Psychological medicine. 2021 Academic Article GET IT
- Systematic review of current natural language processing methods and applications in cardiology. Heart (British Cardiac Society). 2021 Review GET IT
- Estimation of postpartum depression risk from electronic health records using machine learning. BMC pregnancy and childbirth. 2021 Academic Article GET IT
- Identifying urban built environment factors in pregnancy care and maternal mental health outcomes. BMC pregnancy and childbirth. 2021 Academic Article GET IT
- CQL4NLP: Development and Integration of FHIR NLP Extensions in Clinical Quality Language for EHR-driven Phenotyping. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2021 Academic Article GET IT
- Characterization of time-variant and time-invariant assessment of suicidality on Reddit using C-SSRS. PloS one. 2021 Academic Article GET IT
- Comparing Suicide Risk Insights derived from Clinical and Social Media data. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2021 Academic Article GET IT
- Integration of NLP2FHIR Representation with Deep Learning Models for EHR Phenotyping: A Pilot Study on Obesity Datasets. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2021 Academic Article GET IT
- Association of co-occurring opioid or other substance use disorders with increased healthcare utilization in patients with depression. Translational psychiatry. 2021 Academic Article GET IT
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Using weak supervision and deep learning to classify clinical notes for identification of current suicidal ideation.
Journal of psychiatric research.
2021
Academic Article
GET IT
Times cited: 42 -
Machine Learning to Differentiate Risk of Suicide Attempt and Self-harm After General Medical Hospitalization of Women With Mental Illness.
Medical care.
2021
Academic Article
GET IT
Times cited: 18 - Evaluating Commercially Available Mobile Apps for Depression Self-Management. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2021 Academic Article GET IT
- Extracting Social Determinants of Health from Electronic Health Records using Natural Language Processing: A Systematic Review. 2021 Article
- Bi-directional association between depression and HF: An electronic health records-based cohort study. Journal of comorbidity. 2020 Academic Article GET IT
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Correlates of Mental Health Symptoms Among US Adults During COVID-19, March-April 2020.
Public health reports (Washington, D.C. : 1974).
2020
Academic Article
GET IT
Times cited: 35 - Using electronic health records for population health sciences: a case study to evaluate the associations between changes in left ventricular ejection fraction and the built environment. JAMIA open. 2020 Academic Article GET IT
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Healthcare utilization patterns among persons who use drugs during the COVID-19 pandemic.
Journal of substance abuse treatment.
2020
Academic Article
GET IT
Times cited: 22 -
Healthcare utilization among patients with psychiatric hospitalization admitted through the emergency department (ED): A claims-based study.
General hospital psychiatry.
2020
Academic Article
GET IT
Times cited: 3 -
Development and validation of a machine learning algorithm for predicting the risk of postpartum depression among pregnant women.
Journal of affective disorders.
2020
Academic Article
GET IT
Times cited: 87 - Dissecting clinical heterogeneity of bipolar disorder using multiple polygenic risk scores. Translational psychiatry. 2020 Academic Article GET IT
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Data-driven discovery of probable Alzheimer's disease and related dementia subphenotypes using electronic health records.
Learning health systems.
2020
Academic Article
GET IT
Times cited: 19 -
Subphenotyping depression using machine learning and electronic health records.
Learning health systems.
2020
Academic Article
GET IT
Times cited: 12 - Performance of Electronic Health Record Diagnosis Codes for Ambulatory Heart Failure Encounters. Journal of cardiac failure. 2020 Academic Article GET IT
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Toward cross-platform electronic health record-driven phenotyping using Clinical Quality Language.
Learning health systems.
2020
Academic Article
GET IT
Times cited: 19 -
Deep learning in mental health outcome research: a scoping review.
Translational psychiatry.
2020
Information Resource
GET IT
Times cited: 181 -
Multimodal mental health analysis in social media.
PloS one.
2020
Academic Article
GET IT
Times cited: 77 -
Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2020
Academic Article
GET IT
Times cited: 11 -
Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2020
Academic Article
GET IT
Times cited: 15 -
Personal Life Events-A Promising Dimension for Psychiatry in Electronic Health Records.
JAMA psychiatry.
2020
Article
GET IT
Times cited: 14 -
Identifying sub-phenotypes of acute kidney injury using structured and unstructured electronic health record data with memory networks.
Journal of biomedical informatics.
2020
Academic Article
GET IT
Times cited: 19 -
Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries.
Journal of biomedical informatics.
2019
Academic Article
GET IT
Times cited: 44 -
Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation.
Journal of the American Medical Informatics Association : JAMIA.
2019
Academic Article
GET IT
Times cited: 47 -
A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.
Frontiers in genetics.
2019
Academic Article
GET IT
Times cited: 37 - Predictive Modeling of the Risk of Acute Kidney Injury in Critical Care: A Systematic Investigation of The Class Imbalance Problem. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2019 Academic Article GET IT
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Developing a portable natural language processing based phenotyping system.
BMC medical informatics and decision making.
2019
Academic Article
GET IT
Times cited: 30 -
Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2018
Academic Article
GET IT
Times cited: 15 -
A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments.
Journal of the American Medical Informatics Association : JAMIA.
2018
Academic Article
GET IT
Times cited: 23 -
Association networks in a matched case-control design - Co-occurrence patterns of preexisting chronic medical conditions in patients with major depression versus their matched controls.
Journal of biomedical informatics.
2018
Academic Article
GET IT
Times cited: 8 -
Using electronic health records to characterize prescription patterns: focus on antidepressants in nonpsychiatric outpatient settings.
JAMIA open.
2018
Academic Article
GET IT
Times cited: 11 -
The potential value of social determinants of health in predicting health outcomes.
Journal of the American Medical Informatics Association : JAMIA.
2018
Letter
GET IT
Times cited: 8 - CATCH-KB: Establishing a Pharmacogenomics Variant Repository for Chemotherapy-Induced Cardiotoxicity. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2018 Academic Article GET IT
- From Sour Grapes to Low-Hanging Fruit: A Case Study Demonstrating a Practical Strategy for Natural Language Processing Portability. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2018 Academic Article GET IT
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A Framework for Data Quality Assessment in Clinical Research Datasets.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2018
Academic Article
GET IT
Times cited: 33 -
Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2018
Academic Article
GET IT
Times cited: 36 -
Understanding the research landscape of major depressive disorder via literature mining: an entity-level analysis of PubMed data from 1948 to 2017.
JAMIA open.
2018
Academic Article
GET IT
Times cited: 5 - Risk Factors for Depression Among Civilians After the 9/11 World Trade Center Terrorist Attacks: A Systematic Review and Meta-Analysis. PLoS currents. 2018 Academic Article GET IT
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Electronic Health Record Phenotypes for Precision Medicine: Perspectives and Caveats From Treatment of Breast Cancer at a Single Institution.
Clinical and translational science.
2018
Academic Article
GET IT
Times cited: 15 -
Prototype Development: Context-Driven Dynamic XML Ophthalmologic Data Capture Application.
JMIR medical informatics.
2017
Academic Article
GET IT
Times cited: 2 - D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2017 Academic Article GET IT
- Automated Diabetes Case Identification Using Electronic Health Record Data at a Tertiary Care Facility. Mayo Clinic proceedings. Innovations, quality & outcomes. 2017 Academic Article GET IT
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Measuring the impact of ambulatory red blood cell transfusion on home functional status: study protocol for a pilot randomized controlled trial.
Trials.
2017
Academic Article
GET IT
Times cited: 4 -
Genome-wide study of resistant hypertension identified from electronic health records.
PloS one.
2017
Academic Article
GET IT
Times cited: 32 -
Identification of unique venous thromboembolism-susceptibility variants in African-Americans.
Thrombosis and haemostasis.
2017
Academic Article
GET IT
Times cited: 25 -
Time to achieving therapeutic international normalized ratio increases hospital length of stay after heart valve replacement surgery.
American heart journal.
2017
Academic Article
GET IT
Times cited: 3 -
Increased risk of hospitalization for ultrarapid metabolizers of cytochrome P450 2D6.
Pharmacogenomics and personalized medicine.
2017
Academic Article
GET IT
Times cited: 22 -
Improving risk prediction for depression via Elastic Net regression - Results from Korea National Health Insurance Services Data.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2017
Academic Article
GET IT
Times cited: 12 -
Predicting Prolonged Stay in the ICU Attributable to Bleeding in Patients Offered Plasma Transfusion.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2017
Academic Article
GET IT
Times cited: 3 -
Standardized Representation of Clinical Study Data Dictionaries with CIMI Archetypes.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2017
Academic Article
GET IT
Times cited: 8 - Developing a modular architecture for creation of rule-based clinical diagnostic criteria. BioData mining. 2016 Academic Article GET IT
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Practical considerations for implementing genomic information resources. Experiences from eMERGE and CSER.
Applied clinical informatics.
2016
Academic Article
GET IT
Times cited: 21 -
Minimum information required for a DMET experiment reporting.
Pharmacogenomics.
2016
Academic Article
GET IT
Times cited: 5 -
Leveraging electronic health records to study pleiotropic effects on bipolar disorder and medical comorbidities.
Translational psychiatry.
2016
Academic Article
GET IT
Times cited: 7 - A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2016 Academic Article GET IT
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Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution.
Journal of biomedical informatics.
2016
Academic Article
GET IT
Times cited: 9 -
Clinical phenotyping in selected national networks: demonstrating the need for high-throughput, portable, and computational methods.
Artificial intelligence in medicine.
2016
Academic Article
GET IT
Times cited: 74 -
Quantifying the impact of chronic conditions on a diagnosis of major depressive disorder in adults: a cohort study using linked electronic medical records.
BMC psychiatry.
2016
Academic Article
GET IT
Times cited: 29 -
PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability.
Journal of the American Medical Informatics Association : JAMIA.
2016
Academic Article
GET IT
Times cited: 226 -
Improvement in Cardiovascular Risk Prediction with Electronic Health Records.
Journal of cardiovascular translational research.
2016
Academic Article
GET IT
Times cited: 33 -
The phenotypic legacy of admixture between modern humans and Neandertals.
Science (New York, N.Y.).
2016
Academic Article
GET IT
Times cited: 207 -
Developing EHR-driven heart failure risk prediction models using CPXR(Log) with the probabilistic loss function.
Journal of biomedical informatics.
2016
Academic Article
GET IT
Times cited: 63 - Practical considerations in genomic decision support: The eMERGE experience. Journal of pathology informatics. 2015 Academic Article GET IT
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Desiderata for computable representations of electronic health records-driven phenotype algorithms.
Journal of the American Medical Informatics Association : JAMIA.
2015
Academic Article
GET IT
Times cited: 87 - A conceptual model for translating omic data into clinical action. Journal of pathology informatics. 2015 Academic Article GET IT
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Health behaviors and quality of life predictors for risk of hospitalization in an electronic health record-linked biobank.
International journal of general medicine.
2015
Academic Article
GET IT
Times cited: 14 - ePhenotyping for Abdominal Aortic Aneurysm in the Electronic Medical Records and Genomics (eMERGE) Network: Algorithm Development and Konstanz Information Miner Workflow. International journal of biomedical data mining. 2015 Academic Article GET IT
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A Robust e-Epidemiology Tool in Phenotyping Heart Failure with Differentiation for Preserved and Reduced Ejection Fraction: the Electronic Medical Records and Genomics (eMERGE) Network.
Journal of cardiovascular translational research.
2015
Academic Article
GET IT
Times cited: 37 -
Quantifying the importance of disease burden on perceived general health and depressive symptoms in patients within the Mayo Clinic Biobank.
Health and quality of life outcomes.
2015
Academic Article
GET IT
Times cited: 11 - A Modular Architecture for Electronic Health Record-Driven Phenotyping. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2015 Academic Article GET IT
- A Prototype for Executable and Portable Electronic Clinical Quality Measures Using the KNIME Analytics Platform. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2015 Academic Article GET IT
- Studying the Confounding Effects of Socio-Ecological Conditions in Retrospective Clinical Research: A Use Case of Social Stress. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2015 Academic Article GET IT
- Leveraging an Electronic Health Record-Linked Biorepository to Generate a Metformin Pharmacogenomics Hypothesis. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2015 Academic Article GET IT
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Characterizing the epidemiology of postoperative transfusion-related acute lung injury.
Anesthesiology.
2015
Academic Article
GET IT
Times cited: 86 -
Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.
PloS one.
2014
Academic Article
GET IT
Times cited: 32 -
Analysis of online information searching for cardiovascular diseases on a consumer health information portal.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2014
Academic Article
GET IT
Times cited: 4 -
Scalable and High-Throughput Execution of Clinical Quality Measures from Electronic Health Records using MapReduce and the JBoss® Drools Engine.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2014
Academic Article
GET IT
Times cited: 4 -
Evaluating the process of online health information searching: a qualitative approach to exploring consumer perspectives.
Journal of medical Internet research.
2014
Academic Article
GET IT
Times cited: 127 - Empowering Personalized Medicine with Big Data and Semantic Web Technology: Promises, Challenges, and Use Cases. Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data. 2014 Academic Article GET IT
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Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci.
Molecular vision.
2014
Academic Article
GET IT
Times cited: 32 -
Phenome-wide association studies demonstrating pleiotropy of genetic variants within FTO with and without adjustment for body mass index.
Frontiers in genetics.
2014
Academic Article
GET IT
Times cited: 56 -
Comparative analysis of online health queries originating from personal computers and smart devices on a consumer health information portal.
Journal of medical Internet research.
2014
Academic Article
GET IT
Times cited: 29 -
The ATXN2-SH2B3 locus is associated with peripheral arterial disease: an electronic medical record-based genome-wide association study.
Frontiers in genetics.
2014
Academic Article
GET IT
Times cited: 38 -
Design and anticipated outcomes of the eMERGE-PGx project: a multicenter pilot for preemptive pharmacogenomics in electronic health record systems.
Clinical pharmacology and therapeutics.
2014
Academic Article
GET IT
Times cited: 195 -
Design patterns for the development of electronic health record-driven phenotype extraction algorithms.
Journal of biomedical informatics.
2014
Academic Article
GET IT
Times cited: 41 -
An electronic health record driven algorithm to identify incident antidepressant medication users.
Journal of the American Medical Informatics Association : JAMIA.
2014
Academic Article
GET IT
Times cited: 7 - Detecting Associations between Major Depressive Disorder Treatment and Essential Hypertension using Electronic Health Records. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2014 Academic Article GET IT
- Simplifying complex clinical element models to encourage adoption. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2014 Academic Article GET IT
- Variation in Cohorts Derived from EHR Data in Four Care Delivery Settings. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2014 Academic Article GET IT
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Biobanks and personalized medicine.
Clinical genetics.
2014
Information Resource
GET IT
Times cited: 70 -
Preemptive genotyping for personalized medicine: design of the right drug, right dose, right time-using genomic data to individualize treatment protocol.
Mayo Clinic proceedings.
2014
Academic Article
GET IT
Times cited: 246 -
Electronic health records-driven phenotyping: challenges, recent advances, and perspectives.
Journal of the American Medical Informatics Association : JAMIA.
2013
Editorial Article
GET IT
Times cited: 175 -
Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data.
Nature biotechnology.
2013
Academic Article
GET IT
Times cited: 682 -
Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium.
Journal of the American Medical Informatics Association : JAMIA.
2013
Academic Article
GET IT
Times cited: 86 -
Some experiences and opportunities for big data in translational research.
Genetics in medicine : official journal of the American College of Medical Genetics.
2013
Information Resource
GET IT
Times cited: 67 -
Hospitalizations and emergency department use in Mayo Clinic Biobank participants within the employee and community health medical home.
Mayo Clinic proceedings.
2013
Academic Article
GET IT
Times cited: 10 -
The Mayo Clinic Biobank: a building block for individualized medicine.
Mayo Clinic proceedings.
2013
Academic Article
GET IT
Times cited: 169 -
Use of computerized algorithm to identify individuals in need of testing for celiac disease.
Journal of the American Medical Informatics Association : JAMIA.
2013
Academic Article
GET IT
Times cited: 24 -
A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury.
Journal of the American Medical Informatics Association : JAMIA.
2013
Academic Article
GET IT
Times cited: 48 -
Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL.
Journal of biomedical informatics.
2013
Academic Article
GET IT
Times cited: 11 - Bias in recording of body mass index data in the electronic health record. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2013 Academic Article GET IT
- Mining Genotype-Phenotype Associations from Public Knowledge Sources via Semantic Web Querying. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2013 Academic Article GET IT
- PharmGKB Drug Data Normalization with NDF-RT. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2013 Academic Article GET IT
- Using association rule mining for phenotype extraction from electronic health records. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2013 Academic Article GET IT
- Using clinical element models for pharmacogenomic study data standardization. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2013 Academic Article GET IT
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Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.
Circulation.
2013
Academic Article
GET IT
Times cited: 149 -
A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data.
Journal of the American Medical Informatics Association : JAMIA.
2012
Academic Article
GET IT
Times cited: 45 -
Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank.
Journal of biomedical semantics.
2012
Academic Article
GET IT
Times cited: 23 -
Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: a case study.
Journal of biomedical informatics.
2012
Academic Article
GET IT
Times cited: 7 -
An evaluation of the NQF Quality Data Model for representing Electronic Health Record driven phenotyping algorithms.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2012
Academic Article
GET IT
Times cited: 27 -
Mining the human phenome using semantic web technologies: a case study for Type 2 Diabetes.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2012
Academic Article
GET IT
Times cited: 11 -
Modeling and executing electronic health records driven phenotyping algorithms using the NQF Quality Data Model and JBoss® Drools Engine.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2012
Academic Article
GET IT
Times cited: 30 -
Terminology representation guidelines for biomedical ontologies in the semantic web notations.
Journal of biomedical informatics.
2012
Academic Article
GET IT
Times cited: 13 -
Electronic health record surveillance algorithms facilitate the detection of transfusion-related pulmonary complications.
Transfusion.
2012
Academic Article
GET IT
Times cited: 34 - Using semantic web technologies for cohort identification from electronic health records for clinical research. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2012 Academic Article GET IT
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Importance of multi-modal approaches to effectively identify cataract cases from electronic health records.
Journal of the American Medical Informatics Association : JAMIA.
2012
Academic Article
GET IT
Times cited: 104 -
Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: the SHARPn project.
Journal of biomedical informatics.
2012
Academic Article
GET IT
Times cited: 149 -
An OWL meta-ontology for representing the Clinical Element Model.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2011
Academic Article
GET IT
Times cited: 11 -
Analyzing the heterogeneity and complexity of Electronic Health Record oriented phenotyping algorithms.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2011
Academic Article
GET IT
Times cited: 72 -
The SHARPn project on secondary use of Electronic Medical Record data: progress, plans, and possibilities.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2011
Academic Article
GET IT
Times cited: 36 -
Using RxNorm and NDF-RT to classify medication data extracted from electronic health records: experiences from the Rochester Epidemiology Project.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2011
Academic Article
GET IT
Times cited: 29 -
Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies.
American journal of human genetics.
2011
Academic Article
GET IT
Times cited: 202 -
Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels.
Mayo Clinic proceedings.
2011
Academic Article
GET IT
Times cited: 57 -
Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience.
Journal of the American Medical Informatics Association : JAMIA.
2011
Academic Article
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Times cited: 91 -
Electronic medical records for genetic research: results of the eMERGE consortium.
Science translational medicine.
2011
Academic Article
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Times cited: 247 -
Further revamping VA's NDF-RT drug terminology for clinical research.
Journal of the American Medical Informatics Association : JAMIA.
2011
Article
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Times cited: 8 - Evaluating Phenotypic Data Elements for Genetics and Epidemiological Research: Experiences from the eMERGE and PhenX Network Projects. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2011 Academic Article GET IT
-
Use of standard drug vocabularies in clinical research: a case study in pediatrics.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2010
Academic Article
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Times cited: 7 -
Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease.
Journal of the American Medical Informatics Association : JAMIA.
2010
Academic Article
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Times cited: 102 -
Analyzing categorical information in two publicly available drug terminologies: RxNorm and NDF-RT.
Journal of the American Medical Informatics Association : JAMIA.
2010
Academic Article
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Times cited: 30 - LexRDF Model: An RDF-based Unified Model for Heterogeneous Biomedical Ontologies. CEUR workshop proceedings. 2009 Academic Article GET IT
- Survey of modular ontology techniques and their applications in the biomedical domain. Integrated computer-aided engineering. 2009 Academic Article GET IT
-
LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime.
Journal of the American Medical Informatics Association : JAMIA.
2009
Academic Article
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Times cited: 28 -
Formalizing ICD coding rules using Formal Concept Analysis.
Journal of biomedical informatics.
2009
Academic Article
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Times cited: 21 -
LexValueSets: an approach for context-driven value sets extraction.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2008
Academic Article
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Times cited: 4 - Adopting Graph Traversal Techniques for Context-Driven Value Sets Extraction from Biomedical Knowledge Sources. Proceedings. IEEE International Conference on Semantic Computing. 2008 Academic Article GET IT
- Modular Ontology Techniques and their Applications in the Biomedical Domain. Proceedings of the ... IEEE International Conference on Information Reuse and Integration. IEEE International Conference on Information Reuse and Integration. 2008 Academic Article GET IT
- Information Integration from Semantically Heterogeneous Biological Data Sources. International Workshop on Databases and Expert Systems Applications : proceedings. 2005 Academic Article GET IT